Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL5A1P20908 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL5A1P20908 Z95331.1-201ENST00000623075 23112 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC3.88□□□□□ -1.79
COL5A1P20908 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL5A1P20908 HSPD1P11-201ENST00000508643 1702 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
COL5A1P20908 MIR34B-201ENST00000385076 84 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 VDAC2P1-201ENST00000399358 958 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC3.88□□□□□ -1.79
COL5A1P20908 AL139247.1-201ENST00000422768 325 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 OR6C71P-201ENST00000432580 913 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 AC083863.1-201ENST00000438811 231 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.88□□□□□ -1.79
COL5A1P20908 PPIAP3-201ENST00000450588 505 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC3.88□□□□□ -1.79
COL5A1P20908 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
COL5A1P20908 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC3.88□□□□□ -1.79
COL5A1P20908 RPL23AP94-201ENST00000512518 302 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 FTH1P11-201ENST00000517577 551 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 OR8I1P-201ENST00000529291 931 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 CYCSP30-201ENST00000546447 172 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC3.88□□□□□ -1.79
COL5A1P20908 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC3.88□□□□□ -1.79
COL5A1P20908 MIR5195-201ENST00000583555 115 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 AC019278.1-201ENST00000623516 479 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.88□□□□□ -1.79
COL5A1P20908 Z95327.2-201ENST00000414579 1873 ntBASIC3.88□□□□□ -1.79
COL5A1P20908 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC3.88□□□□□ -1.79
COL5A1P20908 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
COL5A1P20908 TNFAIP8-203ENST00000415806 1990 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 IL6STP1-201ENST00000346911 1020 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 AL451050.1-201ENST00000450126 415 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 AC008155.2-201ENST00000464337 397 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 RPL5P30-201ENST00000465511 891 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC3.87□□□□□ -1.79
COL5A1P20908 RN7SKP13-201ENST00000515933 244 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC3.87□□□□□ -1.79
COL5A1P20908 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 MTND6P33-201ENST00000571794 183 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 AP005262.1-201ENST00000582646 997 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.87□□□□□ -1.79
COL5A1P20908 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.87□□□□□ -1.79
COL5A1P20908 AL353600.1-201ENST00000608148 251 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.87□□□□□ -1.79
COL5A1P20908 AL391497.1-201ENST00000608671 547 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 OR7M1P-201ENST00000608946 533 ntBASIC3.87□□□□□ -1.79
COL5A1P20908 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
COL5A1P20908 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
COL5A1P20908 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.87□□□□□ -1.79
COL5A1P20908 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
COL5A1P20908 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A1P20908 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.86□□□□□ -1.79
COL5A1P20908 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A1P20908 U1.1-201ENST00000384101 164 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 AC007066.1-201ENST00000392902 381 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 OR4F13P-201ENST00000428478 931 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 PRDX3P3-201ENST00000447765 522 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.86□□□□□ -1.79
COL5A1P20908 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC3.86□□□□□ -1.79
COL5A1P20908 WDR61-205ENST00000558459 884 ntTSL 3 BASIC3.86□□□□□ -1.79
COL5A1P20908 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC3.86□□□□□ -1.79
COL5A1P20908 MIMT1-201ENST00000597105 1050 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 AL034408.1-202ENST00000636088 415 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A1P20908 AC058791.1-201ENST00000608412 3198 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A1P20908 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A1P20908 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
COL5A1P20908 SAMMSON-213ENST00000641336 1521 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A1P20908 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
COL5A1P20908 ZNF962P-201ENST00000443465 3140 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 AC120036.2-201ENST00000509729 1474 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A1P20908 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
COL5A1P20908 AC021242.1-201ENST00000507315 2035 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.86□□□□□ -1.79
COL5A1P20908 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.86□□□□□ -1.79
COL5A1P20908 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
COL5A1P20908 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.86□□□□□ -1.79
COL5A1P20908 RNU1-15P-201ENST00000353977 144 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 RNA5SP72-201ENST00000364442 117 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 RNU2-65P-201ENST00000410162 185 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.86□□□□□ -1.79
COL5A1P20908 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC3.86□□□□□ -1.79
COL5A1P20908 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.86□□□□□ -1.79
COL5A1P20908 RNU1-95P-201ENST00000516357 160 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 RNU1-128P-201ENST00000516704 160 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC3.86□□□□□ -1.79
COL5A1P20908 AC093591.2-201ENST00000565254 3843 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 AC233702.9-201ENST00000581528 203 ntBASIC3.86□□□□□ -1.79
COL5A1P20908 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms