Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD4P09016 ATP5G1P3-201ENST00000463301 410 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC018635.1-201ENST00000468292 1030 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC104763.1-201ENST00000475274 360 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 UBA52P3-201ENST00000491303 382 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD4P09016 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 AC016550.3-201ENST00000515706 767 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 RNA5SP497-201ENST00000516081 97 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.18□□□□□ -1.74
HOXD4P09016 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD4P09016 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 AC005868.1-201ENST00000536421 331 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 NOP56P3-201ENST00000549457 385 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD4P09016 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.18□□□□□ -1.74
HOXD4P09016 BNIP3P40-201ENST00000596017 556 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AP004372.1-201ENST00000604842 844 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC005021.1-201ENST00000608730 355 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC100847.1-201ENST00000611316 481 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AL133243.1-201ENST00000614487 366 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 AC095038.2-201ENST00000621464 1070 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 BMS1P21-201ENST00000634565 365 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 OR52H1-202ENST00000641796 1061 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
HOXD4P09016 AC009643.2-201ENST00000603543 1448 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
HOXD4P09016 AC010329.2-201ENST00000595195 2737 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.18□□□□□ -1.74
HOXD4P09016 AC107027.3-201ENST00000565095 3473 ntBASIC4.18□□□□□ -1.74
HOXD4P09016 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
HOXD4P09016 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXD4P09016 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.17□□□□□ -1.74
HOXD4P09016 AC139713.2-215ENST00000641428 5037 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD4P09016 AC087190.4-201ENST00000574616 8334 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD4P09016 AL359922.3-201ENST00000624779 1670 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD4P09016 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
HOXD4P09016 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.17□□□□□ -1.74
HOXD4P09016 RSL24D1P1-201ENST00000404972 493 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 Z86062.1-201ENST00000406773 777 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 RN7SKP27-201ENST00000410684 333 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD4P09016 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC4.17□□□□□ -1.74
HOXD4P09016 ARL2BPP3-201ENST00000421226 480 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD4P09016 MTCO2P1-201ENST00000424648 477 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 RPEP3-201ENST00000425462 676 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD4P09016 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD4P09016 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD4P09016 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD4P09016 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD4P09016 AC245517.2-201ENST00000442890 346 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 AC010618.1-201ENST00000469924 477 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 MTND4LP2-201ENST00000502312 285 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 AC025445.1-201ENST00000502728 300 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 HMGB1P3-201ENST00000502802 616 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
HOXD4P09016 AC112198.4-201ENST00000515450 351 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 RNU6-415P-201ENST00000516252 97 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 AC107918.3-201ENST00000533272 382 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 OSBPL9P3-201ENST00000534523 595 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 CD69-203ENST00000536709 1020 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXD4P09016 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.17□□□□□ -1.74
HOXD4P09016 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
HOXD4P09016 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD4P09016 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD4P09016 AC233266.2-201ENST00000567067 528 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.17□□□□□ -1.74
HOXD4P09016 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD4P09016 MTATP6P2-201ENST00000603319 678 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 AC073137.1-201ENST00000605636 634 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 EAF1-AS1-211ENST00000610011 316 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD4P09016 AC104763.3-201ENST00000613765 618 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 AC245389.2-201ENST00000616023 576 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 AC242843.1-201ENST00000618702 573 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 AL138955.1-201ENST00000622881 1040 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 RPL23AP61-201ENST00000623642 466 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 OR5AC4P-202ENST00000642086 985 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
HOXD4P09016 CASC19-206ENST00000641028 1430 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD4P09016 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD4P09016 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD4P09016 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD4P09016 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD4P09016 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.17□□□□□ -1.74
HOXD4P09016 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.17□□□□□ -1.74
HOXD4P09016 AC009951.1-201ENST00000623674 2614 ntBASIC4.17□□□□□ -1.74
HOXD4P09016 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
HOXD4P09016 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms