Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC008759.1-201ENST00000589783 983 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC5.64□□□□□ -1.51
COL3A1P02461 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC135507.1-201ENST00000607214 561 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 MIR6867-201ENST00000610636 67 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL3A1P02461 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL3A1P02461 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC5.64□□□□□ -1.51
COL3A1P02461 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL3A1P02461 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC5.64□□□□□ -1.51
COL3A1P02461 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
COL3A1P02461 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL3A1P02461 PTER-201ENST00000298942 3448 ntTSL 5 BASIC5.64□□□□□ -1.51
COL3A1P02461 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 TPT1P2-201ENST00000413105 503 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AL121882.1-201ENST00000422893 417 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 LINC01673-201ENST00000426418 468 ntTSL 3 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC073508.1-201ENST00000428866 656 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 RPL23AP25-201ENST00000430973 463 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 PRELID3BP10-201ENST00000431957 584 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AL035246.1-201ENST00000433554 1255 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AC122718.1-201ENST00000439448 744 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 SNORD11.1-201ENST00000459482 85 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 FAM133DP-201ENST00000464802 691 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AC020699.1-201ENST00000505161 445 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL3A1P02461 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC011352.1-201ENST00000512300 793 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC5.64□□□□□ -1.51
COL3A1P02461 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 CBX3P7-201ENST00000532876 502 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC012414.2-201ENST00000559474 187 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 RN7SL703P-201ENST00000578485 302 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 PIGPP4-201ENST00000584447 307 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.64□□□□□ -1.51
COL3A1P02461 AC107993.1-201ENST00000591343 684 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AC245036.5-201ENST00000596330 847 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 RPP40P2-201ENST00000603596 712 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AC092954.1-201ENST00000609121 445 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 AC013562.2-201ENST00000611632 603 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 RNA5SP196-201ENST00000625967 102 ntBASIC5.64□□□□□ -1.51
COL3A1P02461 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC5.64□□□□□ -1.51
COL3A1P02461 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL3A1P02461 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
COL3A1P02461 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
COL3A1P02461 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC5.63□□□□□ -1.51
COL3A1P02461 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL3A1P02461 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL3A1P02461 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC5.63□□□□□ -1.51
COL3A1P02461 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
COL3A1P02461 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
COL3A1P02461 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
COL3A1P02461 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC5.63□□□□□ -1.51
COL3A1P02461 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.63□□□□□ -1.51
COL3A1P02461 SEPT7P8-201ENST00000413308 775 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 USP9YP11-201ENST00000427537 717 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 MTCO1P51-201ENST00000427672 1060 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 RPS27AP12-201ENST00000429552 465 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 CSN1S2AP-201ENST00000451783 779 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL3A1P02461 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
COL3A1P02461 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC5.63□□□□□ -1.51
COL3A1P02461 RPS20P4-201ENST00000461659 355 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 AC078857.1-201ENST00000469870 667 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 AF213884.1-201ENST00000488102 463 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 BTG4P1-201ENST00000510421 183 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 AC064801.1-201ENST00000612025 407 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC5.63□□□□□ -1.51
COL3A1P02461 AC019278.1-201ENST00000623516 479 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 AL121594.5-201ENST00000631724 573 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 AC006927.2-201ENST00000639256 389 ntBASIC5.63□□□□□ -1.51
COL3A1P02461 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.63□□□□□ -1.51
COL3A1P02461 MAPK10-349ENST00000641767 3661 ntBASIC5.62□□□□□ -1.51
COL3A1P02461 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL3A1P02461 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL3A1P02461 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
COL3A1P02461 GVINP1-202ENST00000531871 7271 ntBASIC5.62□□□□□ -1.51
COL3A1P02461 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL3A1P02461 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.62□□□□□ -1.51
COL3A1P02461 RNU6-609P-201ENST00000365459 107 ntBASIC5.62□□□□□ -1.51
COL3A1P02461 CASP3-203ENST00000393588 677 ntTSL 4 BASIC5.62□□□□□ -1.51
COL3A1P02461 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC5.62□□□□□ -1.51
COL3A1P02461 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
COL3A1P02461 UBE2D3P3-201ENST00000426992 425 ntBASIC5.62□□□□□ -1.51
COL3A1P02461 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC5.62□□□□□ -1.51
COL3A1P02461 TRAPPC13P1-201ENST00000435991 1062 ntBASIC5.62□□□□□ -1.51
COL3A1P02461 ARAFP2-201ENST00000440565 559 ntBASIC5.62□□□□□ -1.51
COL3A1P02461 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC5.62□□□□□ -1.51
COL3A1P02461 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC5.62□□□□□ -1.51
COL3A1P02461 AC112492.1-201ENST00000449607 712 ntBASIC5.62□□□□□ -1.51
COL3A1P02461 MTCO2P9-201ENST00000503214 694 ntBASIC5.62□□□□□ -1.51
COL3A1P02461 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 95.2 ms