Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SLC38A9-203ENST00000416547 2236 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 CCAR1-201ENST00000265872 4683 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 OR4A15-201ENST00000314706 1035 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 GAPDHP24-201ENST00000328713 983 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 OR6C75-201ENST00000343399 939 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HOXA3O43365 Y_RNA.296-201ENST00000364930 108 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 RNU6-533P-201ENST00000384144 107 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HOXA3O43365 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
HOXA3O43365 AL121972.1-201ENST00000402023 252 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA3O43365 CCNG1P1-201ENST00000406783 885 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 MIR320C1-201ENST00000408566 88 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 MIR1203-201ENST00000408812 85 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 RNA5SP251-201ENST00000410614 137 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 RN7SKP161-201ENST00000411110 305 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC4.88□□□□□ -1.63
HOXA3O43365 BX284632.2-201ENST00000421091 399 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AL035660.1-201ENST00000422041 222 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA3O43365 TRIM60P10Y-201ENST00000425589 751 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 BX890604.2-201ENST00000427883 474 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA3O43365 AC109583.1-201ENST00000432156 268 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA3O43365 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 TRIM60P8Y-201ENST00000436338 762 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 TUBB4BP6-201ENST00000437576 479 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA3O43365 AL512605.1-202ENST00000441919 381 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AL512326.1-201ENST00000443050 721 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 AL359955.2-201ENST00000445380 353 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 MTND5P20-201ENST00000448677 143 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA3O43365 UBFD1P1-201ENST00000473259 814 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AC017015.1-201ENST00000477387 286 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 RN7SL214P-201ENST00000487317 265 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 EEF1A1P25-201ENST00000495704 1267 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA3O43365 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
HOXA3O43365 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC4.88□□□□□ -1.63
HOXA3O43365 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA3O43365 AL389895.1-201ENST00000554127 252 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 TIMM9-209ENST00000556367 572 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA3O43365 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.88□□□□□ -1.63
HOXA3O43365 MIR4776-2-201ENST00000580204 80 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 MIR544B-201ENST00000582372 78 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 NPIPB1P-202ENST00000588786 828 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 BNIP3P11-201ENST00000603878 563 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AL353621.2-201ENST00000605340 133 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AC091965.4-201ENST00000607691 587 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AC104458.1-201ENST00000608243 463 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 MIR6809-201ENST00000612189 116 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA3O43365 AC006338.1-201ENST00000618453 749 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 AC136475.10-201ENST00000620253 385 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 DUXAP9-208ENST00000622815 614 ntBASIC4.88□□□□□ -1.63
HOXA3O43365 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA3O43365 CLEC6A-201ENST00000382073 1682 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 BACH1-202ENST00000399921 5769 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 DPH5-203ENST00000370109 1316 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 AC072062.1-210ENST00000628464 1315 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC4.88□□□□□ -1.63
HOXA3O43365 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
HOXA3O43365 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 CCDC68-201ENST00000337363 1457 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
HOXA3O43365 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
HOXA3O43365 AP001541.1-201ENST00000623322 1904 ntBASIC4.87□□□□□ -1.63
HOXA3O43365 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC4.87□□□□□ -1.63
HOXA3O43365 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
HOXA3O43365 CYP3A43-201ENST00000222382 1515 ntAPPRIS P4 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA3O43365 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC4.87□□□□□ -1.63
HOXA3O43365 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA3O43365 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA3O43365 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
HOXA3O43365 LINC00326-202ENST00000457339 2515 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA3O43365 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
HOXA3O43365 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC4.87□□□□□ -1.63
HOXA3O43365 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
HOXA3O43365 MFSD8-219ENST00000641228 2559 ntBASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms