Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC010608.2-201ENST00000624830 470 ntBASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC090971.4-201ENST00000560291 1800 ntBASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
TMX2-CTNND1H3BSU7 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL133412.1-201ENST00000380194 2992 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 GKN2-201ENST00000328895 800 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 RNU6-984P-201ENST00000363236 109 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 HSPD1P16-201ENST00000402302 394 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 RN7SKP235-201ENST00000410662 305 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL356095.1-201ENST00000417217 199 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 OR51A6P-201ENST00000418680 1004 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 RFESDP1-201ENST00000422350 461 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL117339.2-201ENST00000430475 180 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC006326.1-201ENST00000445465 787 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 DDX39BP2-208ENST00000453923 258 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC113398.2-201ENST00000507630 558 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 SAP18P1-201ENST00000512058 390 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC006130.2-201ENST00000586202 326 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC090181.2-201ENST00000602975 672 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC245389.1-201ENST00000605141 529 ntBASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.13□□□□□ -1.75
TMX2-CTNND1H3BSU7 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 RNA5SP307-201ENST00000362863 116 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL359837.1-201ENST00000381357 287 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 RNU1-44P-201ENST00000384453 163 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 MIR554-201ENST00000384874 96 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 RPL32P23-201ENST00000397237 405 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 RPL7P2-201ENST00000427639 268 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 HMGB3P5-201ENST00000428894 612 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 CDY14P-201ENST00000431260 1014 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 RPL23AP46-201ENST00000438548 490 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 ELOCP8-201ENST00000439309 332 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 CDY12P-201ENST00000440679 1015 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 ELOCP15-201ENST00000442090 332 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 RPL21P89-201ENST00000444021 467 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 CDY13P-201ENST00000445813 1015 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL121760.1-201ENST00000447206 346 ntTSL 2 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 CDY23P-201ENST00000451661 1014 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 SNORA84-201ENST00000459229 133 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 RPL23AP2-201ENST00000471227 466 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC025554.1-201ENST00000505641 188 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 NDUFB4P12-201ENST00000513465 390 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC090281.1-201ENST00000523019 276 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 CCDC58P3-201ENST00000590792 430 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL451086.1-201ENST00000605596 223 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 MIR92B-201ENST00000607575 96 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 AL359715.5-201ENST00000623431 443 ntBASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
TMX2-CTNND1H3BSU7 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC4.12□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms