Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 NIFKP7-201ENST00000503365 834 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC118465.1-201ENST00000513820 1271 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 POLR2KP1-201ENST00000553226 168 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 BLZF2P-201ENST00000553776 1130 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AL354943.1-201ENST00000572103 781 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC022884.2-201ENST00000578535 580 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC040904.1-201ENST00000590850 223 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 LINC01255-206ENST00000591431 441 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC068790.7-201ENST00000602347 528 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC011453.2-201ENST00000603737 729 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC005252.1-201ENST00000604518 1063 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 FAM25E-202ENST00000608562 189 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AL592148.2-201ENST00000612210 372 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC084782.3-201ENST00000612282 578 ntBASIC5.02□□□□□ -1.61
VPS4AQ9UN37 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 GTF2H1-204ENST00000524753 1510 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS4AQ9UN37 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 RNU4-4P-201ENST00000364588 130 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 RNA5SP223-201ENST00000365174 120 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 DUTP5-201ENST00000406790 469 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 RN7SKP247-201ENST00000411094 308 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 RBMY2QP-201ENST00000429799 1147 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 GTF2IP7-202ENST00000436677 309 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AL035551.1-201ENST00000446931 348 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 RPL31P44-201ENST00000447680 377 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 DNAJC19P8-201ENST00000452887 259 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 MRPL42P4-201ENST00000453267 443 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 RNU7-27P-201ENST00000459281 62 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC010468.1-201ENST00000461022 817 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 RN7SL481P-201ENST00000477764 299 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC058823.1-201ENST00000485315 474 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 RN7SL814P-201ENST00000487715 300 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC082651.2-201ENST00000496833 166 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC111193.1-201ENST00000504097 155 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 ERP27-202ENST00000540097 993 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC092490.3-201ENST00000545370 572 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 LINC02137-203ENST00000567448 930 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC009597.2-201ENST00000604659 592 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC018638.7-201ENST00000605836 1114 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AC107075.1-201ENST00000613695 314 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 AL731566.1-201ENST00000620490 1937 ntBASIC5.01□□□□□ -1.61
VPS4AQ9UN37 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
VPS4AQ9UN37 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5□□□□□ -1.61
VPS4AQ9UN37 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5□□□□□ -1.61
VPS4AQ9UN37 LINC01355-201ENST00000566551 5444 ntBASIC5□□□□□ -1.61
VPS4AQ9UN37 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5□□□□□ -1.61
VPS4AQ9UN37 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 144.1 ms