Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC246680.2-201ENST00000422106 389 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 CKS1BP6-201ENST00000424932 240 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 AL451139.1-201ENST00000434718 346 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 AL357520.1-201ENST00000441557 453 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 RPS26P30-201ENST00000443431 335 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 MRPL48P1-201ENST00000445390 636 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 AP000942.1-201ENST00000463969 747 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC073522.1-201ENST00000483312 377 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC007686.1-201ENST00000488511 463 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC011005.3-201ENST00000491624 395 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 C1GALT1P2-201ENST00000510813 1104 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 PRELID3BP4-201ENST00000515476 571 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC005868.1-201ENST00000536421 331 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 HNRNPCP4-201ENST00000571636 900 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 RN7SL802P-201ENST00000577858 299 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC133794.1-201ENST00000602731 914 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.91□□□□□ -1.62
VPS28Q9UK41 SAGE2P-201ENST00000420011 2126 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 AC083843.3-201ENST00000623679 2186 ntBASIC4.91□□□□□ -1.62
VPS28Q9UK41 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
VPS28Q9UK41 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
VPS28Q9UK41 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.9□□□□□ -1.62
VPS28Q9UK41 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.9□□□□□ -1.62
VPS28Q9UK41 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS28Q9UK41 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
VPS28Q9UK41 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.62
VPS28Q9UK41 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.62
VPS28Q9UK41 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.9□□□□□ -1.62
VPS28Q9UK41 AC015813.6-201ENST00000624409 5808 ntBASIC4.9□□□□□ -1.62
VPS28Q9UK41 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.9□□□□□ -1.62
VPS28Q9UK41 AL512646.1-201ENST00000269395 1077 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 MIR298-201ENST00000401212 88 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 UBE2V1P9-201ENST00000414760 368 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC005154.2-201ENST00000438110 379 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AL929288.2-201ENST00000446368 407 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 OR51B8P-201ENST00000449892 769 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 Z95152.1-201ENST00000453556 656 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC108751.2-201ENST00000469993 231 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC091868.1-201ENST00000508746 304 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 RNU1-6P-201ENST00000516290 144 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC104115.2-201ENST00000523026 687 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC124293.1-201ENST00000530034 493 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC055878.1-201ENST00000531858 281 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC009509.2-201ENST00000538640 429 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC010735.1-201ENST00000567305 1026 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 MIR5699-201ENST00000578903 90 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC068620.3-201ENST00000602749 560 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 IMMP1LP1-201ENST00000605170 488 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC010857.1-201ENST00000606398 594 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC018645.2-201ENST00000609151 472 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 MIR6853-201ENST00000619642 74 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC006927.2-201ENST00000639256 389 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AC107068.1-201ENST00000563286 4218 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
VPS28Q9UK41 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
VPS28Q9UK41 AL442639.1-201ENST00000625030 1899 ntBASIC4.9□□□□□ -1.63
VPS28Q9UK41 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 RNF13-202ENST00000361785 1939 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS28Q9UK41 BDH2-201ENST00000296424 1126 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
VPS28Q9UK41 RNU1-82P-201ENST00000390851 165 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 CYB5AP4-201ENST00000396692 399 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AGR3-202ENST00000402239 563 ntTSL 2 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC4.89□□□□□ -1.63
VPS28Q9UK41 RSU1P3-201ENST00000412878 835 ntBASIC4.89□□□□□ -1.63
VPS28Q9UK41 AC004022.2-201ENST00000413824 193 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms