Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC025031.4-201ENST00000621248 3271 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC008033.1-201ENST00000216407 1162 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 RNU1-44P-201ENST00000384453 163 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AL078604.1-201ENST00000404609 466 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC104306.1-201ENST00000449702 371 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 HMGB1P5-202ENST00000451497 985 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AL513343.1-201ENST00000451818 792 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 RPL23AP24-201ENST00000458203 385 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 RN7SL98P-201ENST00000462271 300 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 PGBD4P4-201ENST00000509673 613 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 RAB9BP1-201ENST00000519581 626 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 C1GALT1P3-201ENST00000522049 819 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC009643.1-201ENST00000532030 391 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 NOP56P3-201ENST00000549457 385 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 MIR4284-201ENST00000578924 81 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC007546.2-201ENST00000623996 360 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC009303.2-205ENST00000627670 1091 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 NOL8P1-201ENST00000508336 3529 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.37□□□□□ -1.71
VPS35Q96QK1 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.37□□□□□ -1.71
VPS35Q96QK1 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS35Q96QK1 AC009229.4-201ENST00000623854 1947 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 ZNF208-207ENST00000609966 3653 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 AL451142.2-201ENST00000429076 2090 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC015813.6-201ENST00000624409 5808 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 RNU1-108P-201ENST00000362556 161 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 RNU1-20P-201ENST00000363314 162 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 RNU6-185P-201ENST00000384421 107 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 SNORA11F-201ENST00000408237 128 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 SNRPFP1-201ENST00000414761 252 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 RAC1P3-201ENST00000416129 580 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 UBTFL3-201ENST00000418934 1024 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AL139095.3-201ENST00000419672 1203 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AL732292.1-201ENST00000426692 226 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AL158073.1-201ENST00000426848 1104 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 MTCO1P52-201ENST00000433928 531 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AL132765.1-201ENST00000434165 553 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 RPL12P46-201ENST00000436610 195 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 EIF2S2P2-201ENST00000447161 982 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 RPL7P48-201ENST00000461513 746 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 RN7SL41P-201ENST00000476144 297 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 UBTFL6-201ENST00000477929 1024 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC090013.1-201ENST00000485147 480 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 PRELID3BP7-201ENST00000503606 469 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 IGLVIV-65-201ENST00000517313 360 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC034205.1-201ENST00000520621 638 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
VPS35Q96QK1 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC090312.1-201ENST00000580637 348 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC068790.5-201ENST00000602741 355 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC113403.1-201ENST00000604910 193 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC090525.3-201ENST00000605601 189 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC090948.2-201ENST00000607363 564 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AC078899.5-201ENST00000612475 178 ntBASIC4.36□□□□□ -1.71
VPS35Q96QK1 AL353726.1-201ENST00000614041 1000 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms