Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 USP9YP4-201ENST00000424401 1745 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 SLC17A1-204ENST00000476801 1704 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
SKA3Q8IX90 RAD17P1-201ENST00000418130 2042 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC097504.1-201ENST00000515103 2415 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 SLC38A2-209ENST00000551374 2802 ntTSL 2 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SKA3Q8IX90 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC3.92□□□□□ -1.78
SKA3Q8IX90 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 OR56B2P-202ENST00000641377 2453 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AL356057.1-202ENST00000402263 756 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 RPL37P18-201ENST00000411602 243 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 USP9YP19-201ENST00000412165 485 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 SNRPFP1-201ENST00000414761 252 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC016769.2-201ENST00000414815 475 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 CENPIP1-201ENST00000425713 902 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 MTND4P15-201ENST00000437913 1033 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC007000.2-201ENST00000442564 487 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 EEF1A1P1-201ENST00000447052 739 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 RPS27AP17-201ENST00000463344 455 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 CABYRP1-201ENST00000465493 1045 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 RPL21P126-201ENST00000470049 478 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC107398.1-201ENST00000486904 505 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC108748.1-201ENST00000487772 515 ntTSL 3 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 SUMO1P1-201ENST00000497904 306 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AK3P4-201ENST00000504283 583 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC008694.2-201ENST00000517591 306 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 CDH12P4-201ENST00000517835 295 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 CDH12P3-201ENST00000517935 295 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 CDH12P1-201ENST00000518435 295 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC068446.3-201ENST00000555285 382 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC008759.1-201ENST00000589783 983 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 RPL7P50-201ENST00000600588 727 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AP002360.3-201ENST00000607673 710 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AL359715.5-201ENST00000623431 443 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
SKA3Q8IX90 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AL359715.4-201ENST00000606629 1436 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
SKA3Q8IX90 AL627171.1-201ENST00000618845 1308 ntBASIC3.92□□□□□ -1.78
SKA3Q8IX90 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 MIR129-1-201ENST00000384972 72 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 MIR513A2-201ENST00000385249 127 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 MIR320B1-201ENST00000390209 79 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 RPL26P29-201ENST00000415623 438 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC062016.2-201ENST00000420950 676 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 NDUFA12P1-201ENST00000455914 406 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 RPS23P1-201ENST00000491662 432 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 F11-205ENST00000492972 1204 ntTSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 PRELID3BP7-201ENST00000503606 469 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 DEFB109D-201ENST00000529497 240 ntBASIC3.91□□□□□ -1.78
SKA3Q8IX90 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
SKA3Q8IX90 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC3.91□□□□□ -1.78
SKA3Q8IX90 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC3.91□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 127.6 ms