Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC88AQ3V6T2 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 DYNLL1P7-201ENST00000429273 258 ntBASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 RPL7P1-201ENST00000468161 747 ntBASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 RPL7P9-201ENST00000468715 747 ntBASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 AC106707.2-201ENST00000484182 374 ntBASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 RPL29P14-201ENST00000495837 428 ntBASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 AC104619.4-201ENST00000510773 249 ntBASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 MIR5195-201ENST00000583555 115 ntBASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 AC114878.2-201ENST00000604863 1251 ntBASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 GCSAML-202ENST00000366489 4030 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
CCDC88AQ3V6T2 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 BX510359.1-201ENST00000456973 237 ntBASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC022655.2-201ENST00000577280 318 ntBASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC244505.7-201ENST00000599675 272 ntBASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 ZNF833P-201ENST00000424938 1494 ntBASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC074029.4-201ENST00000624796 1859 ntBASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 RPS3AP46-201ENST00000448352 682 ntBASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 TBCA-203ENST00000517679 545 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC073530.1-202ENST00000538008 508 ntTSL 2 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 AC006971.1-201ENST00000407916 4486 ntBASIC4.94□□□□□ -1.62
CCDC88AQ3V6T2 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 AC007066.1-201ENST00000392902 381 ntBASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 HSPD1P21-201ENST00000436541 245 ntBASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 RPL6P9-201ENST00000466502 859 ntBASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 AC025554.1-201ENST00000505641 188 ntBASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 RN7SKP18-201ENST00000516005 275 ntBASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 AL031985.2-201ENST00000600955 480 ntBASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 AL138686.1-201ENST00000612699 315 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 AC008079.2-201ENST00000623543 20396 ntBASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
CCDC88AQ3V6T2 AC083899.2-201ENST00000423285 1376 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 MTND5P1-201ENST00000445440 1375 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 RNA5SP146-201ENST00000410743 123 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 SEPT7P8-201ENST00000413308 775 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 AC002454.1-204ENST00000419668 527 ntTSL 3 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 AL133244.1-201ENST00000456007 258 ntBASIC4.92□□□□□ -1.62
CCDC88AQ3V6T2 AC005008.1-201ENST00000456151 612 ntBASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms