Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 CASC19-222ENST00000641321 1173 ntBASIC5.08□□□□□ -1.6
PTCHD3Q3KNS1 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.08□□□□□ -1.6
PTCHD3Q3KNS1 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD3Q3KNS1 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.08□□□□□ -1.6
PTCHD3Q3KNS1 TPTE2-202ENST00000382978 1677 ntTSL 5 BASIC5.08□□□□□ -1.6
PTCHD3Q3KNS1 ASNSP1-204ENST00000641977 1664 ntBASIC5.08□□□□□ -1.6
PTCHD3Q3KNS1 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD3Q3KNS1 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
PTCHD3Q3KNS1 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.08□□□□□ -1.6
PTCHD3Q3KNS1 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC005539.1-201ENST00000443768 1479 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 Z98755.1-201ENST00000407015 1384 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 TCP11X1-202ENST00000622971 1372 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 U3.3-201ENST00000362986 216 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 RNA5SP90-201ENST00000364801 99 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 RNU6-304P-201ENST00000364855 107 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 RNU1-74P-201ENST00000384108 171 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 MIR765-201ENST00000390226 114 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 CFHR3-203ENST00000391985 1043 ntTSL 2 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 COX5BP7-201ENST00000414780 274 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC098592.1-201ENST00000419352 333 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 MRPS36P1-201ENST00000421291 307 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC093655.2-201ENST00000425735 631 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 HNRNPA3P4-201ENST00000427514 803 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC073069.1-201ENST00000428657 441 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 ATP5F1P1-201ENST00000433775 569 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 MTCYBP34-201ENST00000439552 670 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 UBE2V1P5-201ENST00000440070 405 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 MTND3P1-201ENST00000441336 220 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AL606662.1-201ENST00000445763 553 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC009158.1-205ENST00000452511 895 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC004884.2-201ENST00000476569 546 ntTSL 4 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 RPL7AP6-201ENST00000477943 801 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 RPL7P18-201ENST00000478965 734 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 RPL21P6-201ENST00000479171 504 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AL049874.2-201ENST00000492636 288 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 NAA50-206ENST00000493454 964 ntTSL 2 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 OTUD4-208ENST00000509620 864 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC010285.3-201ENST00000511668 676 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC109445.1-201ENST00000512356 383 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC012400.1-201ENST00000518452 381 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC087808.1-201ENST00000520501 361 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 MIR4675-201ENST00000577898 77 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC009220.3-201ENST00000604318 586 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AL592221.1-201ENST00000605266 382 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC105129.3-201ENST00000605455 485 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC124312.4-201ENST00000605533 310 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 ATE1-AS1-202ENST00000636460 506 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 ADAM5-202ENST00000399789 1942 ntBASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
PTCHD3Q3KNS1 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 AL022322.2-201ENST00000624072 20397 ntBASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 CCDC169-201ENST00000239859 708 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 RNU6-757P-201ENST00000410334 100 ntBASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 NRBF2P2-201ENST00000413087 861 ntBASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PTCHD3Q3KNS1 AC011233.1-201ENST00000422812 283 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms