Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 RPS27AP12-201ENST00000429552 465 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 Z80107.1-201ENST00000436830 412 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 CBX1P4-201ENST00000439415 457 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 FHP1-201ENST00000442741 703 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 NOP56P2-201ENST00000447491 769 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 RNU6-1218P-201ENST00000458990 108 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 RN7SL319P-201ENST00000480656 221 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 METTL15P1-201ENST00000481421 1045 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC092709.1-201ENST00000521355 1045 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC006518.2-201ENST00000542513 940 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC087897.1-201ENST00000550134 156 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC006349.1-201ENST00000555526 235 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 Z82195.1-201ENST00000604558 398 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 U6.48-201ENST00000618523 106 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC022106.2-201ENST00000620114 757 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC104985.3-201ENST00000623479 597 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC011944.2-201ENST00000624440 683 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 DHX40P1-201ENST00000588725 1412 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AL445437.1-201ENST00000623157 3087 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 SOCS5P3-201ENST00000425115 1576 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC100778.3-201ENST00000580060 1750 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC005332.5-201ENST00000591222 2919 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 OR4K15-201ENST00000305051 1216 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 RNU6-1339P-201ENST00000363574 91 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 SNORA70.4-201ENST00000365509 134 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 MIR589-201ENST00000385238 99 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 RPL32P23-201ENST00000397237 405 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 RN7SKP106-201ENST00000410832 272 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AL732292.1-201ENST00000426692 226 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 CDY14P-201ENST00000431260 1014 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC092159.1-201ENST00000433724 493 ntTSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 PTGES3P1-201ENST00000439531 483 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 CDY12P-201ENST00000440679 1015 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC009263.1-201ENST00000441193 1239 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 CDY13P-201ENST00000445813 1015 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 ARL2BPP10-201ENST00000446487 531 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC243772.1-201ENST00000451620 410 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 CDY23P-201ENST00000451661 1014 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 RPL7P32-201ENST00000457119 744 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 MTND2P28-201ENST00000457540 1044 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 RN7SL189P-201ENST00000468631 289 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC109327.1-201ENST00000471666 403 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 OR52A4P-201ENST00000472867 958 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 TRBV8-2-201ENST00000475637 270 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC010285.3-201ENST00000511668 676 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 SNORA19.3-201ENST00000516165 130 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC104417.1-201ENST00000523974 751 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC124293.1-201ENST00000530034 493 ntBASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
COL28A1Q2UY09 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms