Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
PRKDCP78527 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
PRKDCP78527 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
PRKDCP78527 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
PRKDCP78527 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
PRKDCP78527 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC2.76□□□□□ -1.97
PRKDCP78527 FAT2-201ENST00000261800 14534 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
PRKDCP78527 RNA5SP175-201ENST00000364275 119 ntBASIC2.76□□□□□ -1.97
PRKDCP78527 GLS-204ENST00000409428 816 ntTSL 2 BASIC2.76□□□□□ -1.97
PRKDCP78527 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC2.76□□□□□ -1.97
PRKDCP78527 SAMSN1-AS1-201ENST00000449214 840 ntTSL 3 BASIC2.76□□□□□ -1.97
PRKDCP78527 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC2.76□□□□□ -1.97
PRKDCP78527 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC2.76□□□□□ -1.97
PRKDCP78527 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
PRKDCP78527 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
PRKDCP78527 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC2.76□□□□□ -1.97
PRKDCP78527 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC2.76□□□□□ -1.97
PRKDCP78527 RXFP1-204ENST00000423548 3930 ntTSL 2 BASIC2.75□□□□□ -1.97
PRKDCP78527 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
PRKDCP78527 NANOGNBP1-201ENST00000448444 480 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 AC113192.3-201ENST00000529152 742 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC2.75□□□□□ -1.97
PRKDCP78527 LSM3P2-201ENST00000551246 273 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC2.75□□□□□ -1.97
PRKDCP78527 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC2.75□□□□□ -1.97
PRKDCP78527 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC2.75□□□□□ -1.97
PRKDCP78527 AMY2B-208ENST00000610648 1736 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC2.75□□□□□ -1.97
PRKDCP78527 STEAP2-203ENST00000394622 6612 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 TMEM71-202ENST00000377901 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 AC104581.5-201ENST00000624171 7141 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 OR5B17-201ENST00000357377 946 ntAPPRIS P1 BASIC2.75□□□□□ -1.97
PRKDCP78527 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC2.75□□□□□ -1.97
PRKDCP78527 RPL23AP69-201ENST00000431134 458 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 RPL21P110-201ENST00000433345 446 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 IGKV1OR-3-201ENST00000446944 348 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 SNORD105B-201ENST00000458770 79 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC2.75□□□□□ -1.97
PRKDCP78527 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 SUPT16HP1-201ENST00000537175 3133 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 AL132656.3-201ENST00000606384 1595 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 ANKRD20A10P-201ENST00000457591 1515 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC2.75□□□□□ -1.97
PRKDCP78527 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 SNORA48.8-201ENST00000391324 134 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 ERMN-204ENST00000409925 556 ntTSL 4 BASIC2.75□□□□□ -1.97
PRKDCP78527 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
PRKDCP78527 RNA5SP247-201ENST00000411181 105 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 AC006116.10-201ENST00000591836 581 ntBASIC2.75□□□□□ -1.97
PRKDCP78527 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC2.75□□□□□ -1.97
PRKDCP78527 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC2.75□□□□□ -1.97
PRKDCP78527 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 AKR1C1-202ENST00000380872 6705 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
PRKDCP78527 ZNF573-202ENST00000357309 2124 ntTSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 AC062031.1-201ENST00000414967 747 ntTSL 3 BASIC2.74□□□□□ -1.97
PRKDCP78527 AL161631.1-201ENST00000417933 486 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AL591419.1-201ENST00000427423 339 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC2.74□□□□□ -1.97
PRKDCP78527 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC2.74□□□□□ -1.97
PRKDCP78527 AC023141.12-201ENST00000512399 199 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 RNU2-27P-201ENST00000516185 142 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AC087276.1-201ENST00000529659 480 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 NRBF2P5-201ENST00000603087 788 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
PRKDCP78527 RNU4-35P-201ENST00000362588 141 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 Y_RNA.238-201ENST00000364441 102 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC2.74□□□□□ -1.97
PRKDCP78527 EIF4A1P11-201ENST00000451239 222 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 RNA5SP230-201ENST00000517039 122 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC2.74□□□□□ -1.97
PRKDCP78527 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC2.74□□□□□ -1.97
PRKDCP78527 LINC01362-202ENST00000452901 1712 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 AL513548.1-201ENST00000562904 1724 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 LINC02475-202ENST00000512678 2622 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC2.74□□□□□ -1.97
PRKDCP78527 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 AP000432.2-201ENST00000624164 2048 ntBASIC2.74□□□□□ -1.97
PRKDCP78527 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
PRKDCP78527 UBE2U-201ENST00000371076 1136 ntAPPRIS P2 TSL 1 (best) BASIC2.74□□□□□ -1.97
PRKDCP78527 SNORD66.1-201ENST00000391230 76 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms