Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 YWHAZP2-201ENST00000440317 728 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC114755.5-201ENST00000447760 831 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC090686.1-201ENST00000481577 749 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC023050.1-201ENST00000498198 304 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC098799.3-201ENST00000506095 438 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC025674.1-201ENST00000507074 324 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AP002812.4-201ENST00000532139 286 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC106785.3-201ENST00000564064 847 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 MIR4458-201ENST00000578872 75 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 CBX3P2-202ENST00000583365 535 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC090948.1-201ENST00000607464 549 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 U6.48-201ENST00000618523 106 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AL023881.1-201ENST00000621088 301 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 AC000123.3-201ENST00000624029 4975 ntBASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
HDDC3Q8N4P3 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 SNORD115-48-201ENST00000364764 76 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 SNORA37-201ENST00000384504 129 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 RNU6-883P-201ENST00000384597 107 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AC010385.1-201ENST00000412374 256 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 TMBIM7P-201ENST00000418074 855 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 RPL7P57-201ENST00000423238 740 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 RPL7AP25-201ENST00000423357 805 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 EIF4HP2-201ENST00000424380 563 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 NUTF2P3-201ENST00000448540 384 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AL162388.1-201ENST00000450912 352 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 SCARNA10-201ENST00000459255 330 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 RPL21P126-201ENST00000470049 478 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 HMGB3P16-201ENST00000508037 287 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 IGLVIV-65-201ENST00000517313 360 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AC027176.2-201ENST00000559166 746 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AC021351.1-201ENST00000560886 652 ntTSL 5 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AC106785.1-201ENST00000565935 262 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AC079791.1-201ENST00000605356 973 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AC015849.2-201ENST00000605738 409 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AC015804.1-201ENST00000622935 435 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 AL022393.1-201ENST00000625142 1677 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 USP9YP4-201ENST00000424401 1745 ntBASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
HDDC3Q8N4P3 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 RAD1P1-201ENST00000231383 813 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 OR5T3-201ENST00000303059 1023 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 RNA5SP28-201ENST00000363841 119 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 UBBP2-201ENST00000376781 231 ntBASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.62□□□□□ -1.67
HDDC3Q8N4P3 AC092447.2-201ENST00000435487 669 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms