Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
COL28A1Q2UY09 SCARNA15-201ENST00000607520 4325 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 ORMDL1-201ENST00000325795 2692 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 RNF6P1-201ENST00000444889 1784 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 MTCO1P6-201ENST00000481192 1384 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC108751.5-201ENST00000492880 1336 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 RNU1-146P-201ENST00000364015 165 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 RNU6-317P-201ENST00000384031 107 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 Z97832.1-201ENST00000402490 328 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 RN7SKP100-201ENST00000411258 284 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC092638.1-201ENST00000411966 1275 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 OR5AW1P-201ENST00000426334 1006 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AP001324.1-201ENST00000428553 399 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 YWHAEP5-201ENST00000431545 765 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AL592437.1-201ENST00000443781 492 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AL137845.2-201ENST00000444292 988 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 KNOP1P3-201ENST00000446933 426 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AL031313.1-201ENST00000448435 256 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 OR1H1P-201ENST00000448731 937 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC090804.1-201ENST00000448870 490 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC005912.1-201ENST00000495392 255 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 ENSA-211ENST00000503345 793 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC020593.1-201ENST00000507399 299 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC104108.1-201ENST00000509930 412 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC006427.1-201ENST00000514359 712 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 PRELID3BP4-201ENST00000515476 571 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC091163.3-201ENST00000518269 1144 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 MTCYBP13-201ENST00000578634 1093 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 PRPF19P1-201ENST00000584766 898 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 VN1R84P-201ENST00000593697 235 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC073387.2-201ENST00000604797 784 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC245389.1-201ENST00000605141 529 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC004232.3-201ENST00000622977 525 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC034229.5-201ENST00000624258 185 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 SAMMSON-226ENST00000642089 1582 ntBASIC4.81□□□□□ -1.64
COL28A1Q2UY09 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.81□□□□□ -1.64
COL28A1Q2UY09 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AL022393.1-201ENST00000625142 1677 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 RNU6-304P-201ENST00000364855 107 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 OR1L6-202ENST00000373684 1044 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.8□□□□□ -1.64
COL28A1Q2UY09 SNORA66-201ENST00000384792 133 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 SNORA48.4-201ENST00000391089 134 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AL603865.2-201ENST00000401679 213 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 SNORA11.1-201ENST00000408133 129 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 RN7SKP114-201ENST00000410327 279 ntBASIC4.8□□□□□ -1.64
COL28A1Q2UY09 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 91.2 ms