Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA1P55317 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.83□□□□□ -1.8
FOXA1P55317 IPO5P1-202ENST00000600039 287 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 ARF4P1-201ENST00000605447 541 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AC010435.1-201ENST00000623353 1177 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA1P55317 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC3.83□□□□□ -1.8
FOXA1P55317 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC3.83□□□□□ -1.8
FOXA1P55317 USP9YP4-201ENST00000424401 1745 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 AC093535.2-201ENST00000624769 2326 ntBASIC3.83□□□□□ -1.8
FOXA1P55317 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA1P55317 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
FOXA1P55317 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA1P55317 PHEX-201ENST00000379374 6172 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA1P55317 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA1P55317 FAM35DP-201ENST00000323387 2712 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 ZSCAN4-202ENST00000612521 1979 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
FOXA1P55317 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA1P55317 AC005261.4-201ENST00000600047 1385 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA1P55317 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
FOXA1P55317 AC016397.1-201ENST00000412463 242 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXA1P55317 GAPDHP49-201ENST00000421421 961 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 AC234779.1-201ENST00000425910 285 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 COX6CP15-201ENST00000426313 211 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 DNAJC19P7-201ENST00000428811 344 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 MTND6P18-201ENST00000439477 513 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA1P55317 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA1P55317 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA1P55317 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA1P55317 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC3.82□□□□□ -1.8
FOXA1P55317 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC3.82□□□□□ -1.8
FOXA1P55317 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC3.82□□□□□ -1.8
FOXA1P55317 AL445567.2-201ENST00000618935 498 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 RMST_9.1-201ENST00000619945 193 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 AC010608.2-201ENST00000624830 470 ntBASIC3.82□□□□□ -1.8
FOXA1P55317 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA1P55317 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA1P55317 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA1P55317 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
FOXA1P55317 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
FOXA1P55317 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA1P55317 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA1P55317 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA1P55317 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA1P55317 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA1P55317 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA1P55317 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
FOXA1P55317 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA1P55317 CREM-201ENST00000337656 900 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
FOXA1P55317 OR8G1-201ENST00000341493 936 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
FOXA1P55317 RPS4XP9-201ENST00000405151 780 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.81□□□□□ -1.8
FOXA1P55317 LINC02089-201ENST00000412360 682 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXA1P55317 OR8G2P-201ENST00000412796 908 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 RPL7AP73-201ENST00000413490 353 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 RANP8-201ENST00000444720 713 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 AL500522.2-201ENST00000448562 343 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 CREM-230ENST00000474931 626 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXA1P55317 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXA1P55317 AL132838.2-201ENST00000492041 314 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA1P55317 AC087369.1-201ENST00000520775 996 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 AP003730.1-201ENST00000524605 285 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXA1P55317 HYKK-203ENST00000563233 734 ntTSL 2 BASIC3.81□□□□□ -1.8
FOXA1P55317 AC020914.4-201ENST00000597690 277 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXA1P55317 AL390816.3-201ENST00000604527 1066 ntBASIC3.81□□□□□ -1.8
FOXA1P55317 LGI1-209ENST00000627699 664 ntTSL 3 BASIC3.81□□□□□ -1.8
FOXA1P55317 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
FOXA1P55317 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.81□□□□□ -1.8
FOXA1P55317 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
FOXA1P55317 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.8□□□□□ -1.8
FOXA1P55317 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
FOXA1P55317 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA1P55317 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC3.8□□□□□ -1.8
FOXA1P55317 IFNNP1-201ENST00000429219 553 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 HIGD1AP4-201ENST00000430194 280 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA1P55317 CCNB1IP1P2-201ENST00000432876 818 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 AC073143.1-201ENST00000436316 395 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA1P55317 RPL23AP2-201ENST00000471227 466 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 AC106806.2-201ENST00000509365 500 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 AC021733.1-201ENST00000519786 325 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA1P55317 AP003472.1-201ENST00000519844 644 ntTSL 3 BASIC3.8□□□□□ -1.8
FOXA1P55317 AC009643.1-201ENST00000532030 391 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 YPEL5P3-201ENST00000547227 352 ntBASIC3.8□□□□□ -1.8
FOXA1P55317 AC008126.1-201ENST00000549019 480 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 79 ms