Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
NUP98P52948 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.85□□□□□ -1.63
NUP98P52948 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NUP98P52948 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
NUP98P52948 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.63
NUP98P52948 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
NUP98P52948 AL121878.1-201ENST00000418638 859 ntBASIC4.84□□□□□ -1.63
NUP98P52948 KRR1P1-201ENST00000419430 803 ntBASIC4.84□□□□□ -1.63
NUP98P52948 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.84□□□□□ -1.63
NUP98P52948 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.84□□□□□ -1.63
NUP98P52948 AL451050.1-201ENST00000450126 415 ntBASIC4.84□□□□□ -1.63
NUP98P52948 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC4.84□□□□□ -1.63
NUP98P52948 DCUN1D1-204ENST00000469954 970 ntTSL 3 BASIC4.84□□□□□ -1.63
NUP98P52948 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.84□□□□□ -1.63
NUP98P52948 AC110768.1-201ENST00000509222 400 ntBASIC4.84□□□□□ -1.63
NUP98P52948 AC008802.1-201ENST00000519121 791 ntBASIC4.84□□□□□ -1.63
NUP98P52948 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.84□□□□□ -1.63
NUP98P52948 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
NUP98P52948 AC008011.1-201ENST00000545989 227 ntBASIC4.84□□□□□ -1.63
NUP98P52948 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC4.84□□□□□ -1.63
NUP98P52948 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.84□□□□□ -1.63
NUP98P52948 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.84□□□□□ -1.63
NUP98P52948 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
NUP98P52948 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
NUP98P52948 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
NUP98P52948 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.84□□□□□ -1.63
NUP98P52948 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
NUP98P52948 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.83□□□□□ -1.64
NUP98P52948 SNORD3H-201ENST00000384486 214 ntBASIC4.83□□□□□ -1.64
NUP98P52948 ATP5F1P4-201ENST00000397288 746 ntBASIC4.83□□□□□ -1.64
NUP98P52948 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.83□□□□□ -1.64
NUP98P52948 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC4.83□□□□□ -1.64
NUP98P52948 ANK3-207ENST00000460468 677 ntTSL 3 BASIC4.83□□□□□ -1.64
NUP98P52948 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.83□□□□□ -1.64
NUP98P52948 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.83□□□□□ -1.64
NUP98P52948 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.83□□□□□ -1.64
NUP98P52948 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.83□□□□□ -1.64
NUP98P52948 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.83□□□□□ -1.64
NUP98P52948 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
NUP98P52948 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.83□□□□□ -1.64
NUP98P52948 STON1-GTF2A1L-202ENST00000394754 3824 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
NUP98P52948 F2RL2-201ENST00000296641 3429 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
NUP98P52948 MAPK10-303ENST00000641324 3959 ntBASIC4.83□□□□□ -1.64
NUP98P52948 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
NUP98P52948 MECOM-201ENST00000264674 4900 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
NUP98P52948 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
NUP98P52948 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
NUP98P52948 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.83□□□□□ -1.64
NUP98P52948 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
NUP98P52948 MIR1251-201ENST00000408552 70 ntBASIC4.83□□□□□ -1.64
NUP98P52948 ZNF736P2Y-201ENST00000416040 1279 ntBASIC4.83□□□□□ -1.64
NUP98P52948 AC092647.1-201ENST00000420654 287 ntBASIC4.83□□□□□ -1.64
NUP98P52948 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC4.83□□□□□ -1.64
NUP98P52948 AC084759.1-201ENST00000561168 290 ntBASIC4.83□□□□□ -1.64
NUP98P52948 AC067968.2-201ENST00000592583 566 ntTSL 4 BASIC4.83□□□□□ -1.64
NUP98P52948 AC007179.3-201ENST00000604976 235 ntBASIC4.83□□□□□ -1.64
NUP98P52948 AC007342.8-201ENST00000623278 678 ntBASIC4.83□□□□□ -1.64
NUP98P52948 U6.105-201ENST00000637379 88 ntBASIC4.83□□□□□ -1.64
NUP98P52948 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
NUP98P52948 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.83□□□□□ -1.64
NUP98P52948 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NUP98P52948 PDSS1P1-201ENST00000422953 1114 ntBASIC4.82□□□□□ -1.64
NUP98P52948 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.82□□□□□ -1.64
NUP98P52948 RNA5SP164-201ENST00000516533 110 ntBASIC4.82□□□□□ -1.64
NUP98P52948 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC4.82□□□□□ -1.64
NUP98P52948 AL354920.1-202ENST00000531661 1017 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NUP98P52948 UBTFL9-201ENST00000534504 1148 ntBASIC4.82□□□□□ -1.64
NUP98P52948 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP98P52948 AL391261.4-201ENST00000616012 481 ntBASIC4.82□□□□□ -1.64
NUP98P52948 MIR3651-201ENST00000630427 90 ntBASIC4.82□□□□□ -1.64
NUP98P52948 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP98P52948 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP98P52948 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
NUP98P52948 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
NUP98P52948 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP98P52948 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP98P52948 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
NUP98P52948 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
NUP98P52948 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP98P52948 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
NUP98P52948 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.82□□□□□ -1.64
NUP98P52948 AP001273.1-201ENST00000624493 3152 ntBASIC4.81□□□□□ -1.64
NUP98P52948 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.81□□□□□ -1.64
NUP98P52948 MIR23A-201ENST00000385245 73 ntBASIC4.81□□□□□ -1.64
NUP98P52948 MTCO1P54-201ENST00000430139 712 ntBASIC4.81□□□□□ -1.64
NUP98P52948 AC011742.1-201ENST00000431448 434 ntBASIC4.81□□□□□ -1.64
NUP98P52948 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP98P52948 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 BTG4P1-201ENST00000510421 183 ntBASIC4.81□□□□□ -1.64
NUP98P52948 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.81□□□□□ -1.64
NUP98P52948 AC020914.6-201ENST00000594327 272 ntBASIC4.81□□□□□ -1.64
NUP98P52948 AP000255.1-201ENST00000610276 676 ntBASIC4.81□□□□□ -1.64
NUP98P52948 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
NUP98P52948 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
NUP98P52948 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
NUP98P52948 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
NUP98P52948 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.81□□□□□ -1.64
NUP98P52948 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 99.1 ms