Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH6P52701 AL590609.2-201ENST00000421430 368 ntBASIC5.68□□□□□ -1.5
MSH6P52701 RPL7P4-203ENST00000430239 730 ntBASIC5.68□□□□□ -1.5
MSH6P52701 AL159987.2-201ENST00000432754 307 ntBASIC5.68□□□□□ -1.5
MSH6P52701 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH6P52701 AC104306.1-201ENST00000449702 371 ntBASIC5.68□□□□□ -1.5
MSH6P52701 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH6P52701 RNA5SP103-201ENST00000459503 118 ntBASIC5.68□□□□□ -1.5
MSH6P52701 SETP6-201ENST00000479329 568 ntBASIC5.68□□□□□ -1.5
MSH6P52701 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC5.68□□□□□ -1.5
MSH6P52701 CDH12P2-201ENST00000504393 298 ntBASIC5.68□□□□□ -1.5
MSH6P52701 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH6P52701 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH6P52701 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.68□□□□□ -1.5
MSH6P52701 AC015726.1-201ENST00000602353 681 ntBASIC5.68□□□□□ -1.5
MSH6P52701 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
MSH6P52701 AC139426.3-201ENST00000605648 2059 ntBASIC5.68□□□□□ -1.5
MSH6P52701 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
MSH6P52701 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH6P52701 AC105074.1-201ENST00000623380 3095 ntBASIC5.68□□□□□ -1.5
MSH6P52701 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
MSH6P52701 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
MSH6P52701 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.68□□□□□ -1.5
MSH6P52701 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC5.67□□□□□ -1.5
MSH6P52701 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC5.67□□□□□ -1.5
MSH6P52701 SETP9-201ENST00000423837 832 ntBASIC5.67□□□□□ -1.5
MSH6P52701 HSPE1P16-201ENST00000426640 348 ntBASIC5.67□□□□□ -1.5
MSH6P52701 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC5.67□□□□□ -1.5
MSH6P52701 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC5.67□□□□□ -1.5
MSH6P52701 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSH6P52701 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH6P52701 TRAPPC2P2-201ENST00000517589 409 ntBASIC5.67□□□□□ -1.5
MSH6P52701 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC5.67□□□□□ -1.5
MSH6P52701 AC027807.1-201ENST00000559921 996 ntBASIC5.67□□□□□ -1.5
MSH6P52701 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.67□□□□□ -1.5
MSH6P52701 AL031985.2-201ENST00000600955 480 ntBASIC5.67□□□□□ -1.5
MSH6P52701 AL049634.3-201ENST00000604968 457 ntBASIC5.67□□□□□ -1.5
MSH6P52701 EEF1A1P42-201ENST00000613436 1331 ntBASIC5.67□□□□□ -1.5
MSH6P52701 Z95331.1-201ENST00000623075 23112 ntBASIC5.67□□□□□ -1.5
MSH6P52701 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
MSH6P52701 AC126323.6-202ENST00000568092 3511 ntBASIC5.67□□□□□ -1.5
MSH6P52701 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
MSH6P52701 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
MSH6P52701 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
MSH6P52701 TANK-206ENST00000406287 875 ntTSL 5 BASIC5.67□□□□□ -1.5
MSH6P52701 MIR1911-201ENST00000410783 80 ntBASIC5.67□□□□□ -1.5
MSH6P52701 AC096664.2-201ENST00000411843 406 ntBASIC5.67□□□□□ -1.5
MSH6P52701 VDAC1P9-201ENST00000412766 841 ntBASIC5.67□□□□□ -1.5
MSH6P52701 AC245052.5-201ENST00000416320 649 ntBASIC5.67□□□□□ -1.5
MSH6P52701 TRGV5P-201ENST00000419915 354 ntBASIC5.67□□□□□ -1.5
MSH6P52701 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC5.67□□□□□ -1.5
MSH6P52701 LINC01923-201ENST00000443261 592 ntTSL 5 BASIC5.67□□□□□ -1.5
MSH6P52701 RPS11P1-201ENST00000451072 473 ntBASIC5.67□□□□□ -1.5
MSH6P52701 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC5.67□□□□□ -1.5
MSH6P52701 UBE2CP3-201ENST00000502715 450 ntBASIC5.67□□□□□ -1.5
MSH6P52701 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC5.67□□□□□ -1.5
MSH6P52701 RN7SKP46-201ENST00000515942 234 ntBASIC5.67□□□□□ -1.5
MSH6P52701 RNU1-103P-201ENST00000516502 125 ntBASIC5.67□□□□□ -1.5
MSH6P52701 AC079598.1-201ENST00000548691 554 ntTSL 4 BASIC5.67□□□□□ -1.5
MSH6P52701 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC5.67□□□□□ -1.5
MSH6P52701 MIR3651-201ENST00000630427 90 ntBASIC5.67□□□□□ -1.5
MSH6P52701 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.66□□□□□ -1.5
MSH6P52701 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.66□□□□□ -1.5
MSH6P52701 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH6P52701 AL442128.2-201ENST00000620246 1824 ntBASIC5.66□□□□□ -1.5
MSH6P52701 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSH6P52701 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH6P52701 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.66□□□□□ -1.5
MSH6P52701 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC5.66□□□□□ -1.5
MSH6P52701 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC5.66□□□□□ -1.5
MSH6P52701 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.66□□□□□ -1.5
MSH6P52701 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
MSH6P52701 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC5.66□□□□□ -1.5
MSH6P52701 AC007066.1-201ENST00000392902 381 ntBASIC5.66□□□□□ -1.5
MSH6P52701 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC5.66□□□□□ -1.5
MSH6P52701 HSPD1P21-201ENST00000436541 245 ntBASIC5.66□□□□□ -1.5
MSH6P52701 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSH6P52701 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
MSH6P52701 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC5.66□□□□□ -1.5
MSH6P52701 HMGN1P15-201ENST00000513870 295 ntBASIC5.66□□□□□ -1.5
MSH6P52701 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.66□□□□□ -1.5
MSH6P52701 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.66□□□□□ -1.5
MSH6P52701 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC5.66□□□□□ -1.5
MSH6P52701 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
MSH6P52701 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSH6P52701 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSH6P52701 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.65□□□□□ -1.5
MSH6P52701 SMG1P4-204ENST00000523028 4131 ntBASIC5.65□□□□□ -1.5
MSH6P52701 AC092821.1-204ENST00000518709 3552 ntTSL 5 BASIC5.65□□□□□ -1.5
MSH6P52701 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.65□□□□□ -1.5
MSH6P52701 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSH6P52701 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.65□□□□□ -1.5
MSH6P52701 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
MSH6P52701 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.51
MSH6P52701 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.65□□□□□ -1.51
MSH6P52701 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.65□□□□□ -1.51
MSH6P52701 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
MSH6P52701 AL450992.3-201ENST00000413192 568 ntBASIC5.65□□□□□ -1.51
MSH6P52701 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.65□□□□□ -1.51
MSH6P52701 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC5.65□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms