Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC4.44□□□□□ -1.7
HOXA9P31269 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA9P31269 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.44□□□□□ -1.7
HOXA9P31269 AL451142.2-201ENST00000429076 2090 ntBASIC4.44□□□□□ -1.7
HOXA9P31269 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA9P31269 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA9P31269 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA9P31269 HSPD1P14-201ENST00000432666 1618 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA9P31269 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA9P31269 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA9P31269 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.43□□□□□ -1.7
HOXA9P31269 RNU1-44P-201ENST00000384453 163 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 RNU11-4P-201ENST00000391149 133 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 RN7SKP159-201ENST00000410657 292 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 RNA5SP146-201ENST00000410743 123 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 HMGB3P5-201ENST00000428894 612 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA9P31269 AC011897.1-201ENST00000450715 346 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA9P31269 LINC01825-201ENST00000452381 850 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA9P31269 SEPT14P1-201ENST00000458703 648 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 AC010460.1-201ENST00000507087 466 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 FTH1P21-201ENST00000512179 511 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 NDUFB4P12-201ENST00000513465 390 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 IGKV1OR2-1-201ENST00000514060 354 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 MTND4LP31-201ENST00000514859 294 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 SNORA67.7-201ENST00000516664 135 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.43□□□□□ -1.7
HOXA9P31269 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.43□□□□□ -1.7
HOXA9P31269 RN7SL703P-201ENST00000578485 302 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC4.43□□□□□ -1.7
HOXA9P31269 MIR4429-201ENST00000580105 73 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 MIR3158-1-201ENST00000583596 81 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 SLC14A2-AS1-203ENST00000592286 528 ntTSL 4 BASIC4.43□□□□□ -1.7
HOXA9P31269 BNIP3P22-201ENST00000593399 556 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 AC026979.4-201ENST00000606555 645 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA9P31269 AC008013.2-202ENST00000637965 364 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.43□□□□□ -1.7
HOXA9P31269 CYP1D1P-201ENST00000416662 1433 ntBASIC4.43□□□□□ -1.7
HOXA9P31269 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA9P31269 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
HOXA9P31269 ANKRD30A-204ENST00000602533 4458 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
HOXA9P31269 EOGT-210ENST00000615922 1931 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
HOXA9P31269 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA9P31269 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA9P31269 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA9P31269 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
HOXA9P31269 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXA9P31269 RNU6-984P-201ENST00000363236 109 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.42□□□□□ -1.7
HOXA9P31269 RNA5SP372-201ENST00000390836 115 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 MIR1179-201ENST00000408703 91 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA9P31269 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA9P31269 AC115285.1-201ENST00000424879 736 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 RPEP2-201ENST00000432149 701 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 PPIAP13-201ENST00000434706 478 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA9P31269 AL035551.1-201ENST00000446931 348 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 RPL7P22-201ENST00000466005 733 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 RN7SL542P-201ENST00000467147 294 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.42□□□□□ -1.7
HOXA9P31269 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA9P31269 MTCO3P42-201ENST00000509488 518 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA9P31269 MTCO3P39-201ENST00000514812 518 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 AC025437.2-201ENST00000518103 548 ntTSL 4 BASIC4.42□□□□□ -1.7
HOXA9P31269 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA9P31269 AC090819.1-201ENST00000523800 1111 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC4.42□□□□□ -1.7
HOXA9P31269 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA9P31269 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.42□□□□□ -1.7
HOXA9P31269 CCDC58P3-201ENST00000590792 430 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC4.42□□□□□ -1.7
HOXA9P31269 AC005034.4-201ENST00000603612 899 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA9P31269 AC006133.1-201ENST00000617106 264 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 MIR7151-201ENST00000617477 60 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 CASC19-261ENST00000641853 1638 ntBASIC4.42□□□□□ -1.7
HOXA9P31269 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA9P31269 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA9P31269 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
HOXA9P31269 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA9P31269 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC4.41□□□□□ -1.7
HOXA9P31269 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HOXA9P31269 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
HOXA9P31269 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA9P31269 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.41□□□□□ -1.7
HOXA9P31269 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
HOXA9P31269 OR11H4-201ENST00000315409 1082 ntBASIC4.41□□□□□ -1.7
HOXA9P31269 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
HOXA9P31269 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
HOXA9P31269 AL136131.1-201ENST00000406079 803 ntBASIC4.41□□□□□ -1.7
HOXA9P31269 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.41□□□□□ -1.7
HOXA9P31269 TPT1P2-201ENST00000413105 503 ntBASIC4.41□□□□□ -1.7
HOXA9P31269 UBTFL3-201ENST00000418934 1024 ntBASIC4.41□□□□□ -1.7
HOXA9P31269 RPS12P5-201ENST00000423449 371 ntBASIC4.41□□□□□ -1.7
HOXA9P31269 TTC3-AS1-201ENST00000424733 1097 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms