Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC3.79□□□□□ -1.8
USF1P22415 PDZPH1P-202ENST00000602846 722 ntTSL 3 BASIC3.79□□□□□ -1.8
USF1P22415 PSMA6P4-201ENST00000603247 718 ntBASIC3.79□□□□□ -1.8
USF1P22415 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.79□□□□□ -1.8
USF1P22415 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USF1P22415 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC3.79□□□□□ -1.8
USF1P22415 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC3.79□□□□□ -1.8
USF1P22415 AL031119.1-201ENST00000404707 1879 ntBASIC3.79□□□□□ -1.8
USF1P22415 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
USF1P22415 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC3.79□□□□□ -1.8
USF1P22415 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
USF1P22415 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
USF1P22415 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC3.78□□□□□ -1.8
USF1P22415 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC3.78□□□□□ -1.8
USF1P22415 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.78□□□□□ -1.8
USF1P22415 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC3.78□□□□□ -1.8
USF1P22415 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 RNA5SP388-201ENST00000362584 119 ntBASIC3.78□□□□□ -1.8
USF1P22415 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
USF1P22415 HDGFP1-201ENST00000405943 252 ntBASIC3.78□□□□□ -1.8
USF1P22415 LSM5-205ENST00000409952 687 ntTSL 4 BASIC3.78□□□□□ -1.8
USF1P22415 LSM5-206ENST00000409987 504 ntTSL 5 BASIC3.78□□□□□ -1.8
USF1P22415 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC3.78□□□□□ -1.8
USF1P22415 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC3.78□□□□□ -1.8
USF1P22415 OR2X1P-201ENST00000421144 687 ntBASIC3.78□□□□□ -1.8
USF1P22415 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 KCTD10P1-201ENST00000434203 625 ntBASIC3.78□□□□□ -1.8
USF1P22415 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.78□□□□□ -1.8
USF1P22415 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.78□□□□□ -1.8
USF1P22415 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC3.78□□□□□ -1.8
USF1P22415 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC3.78□□□□□ -1.8
USF1P22415 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC3.78□□□□□ -1.8
USF1P22415 UQCRHP4-201ENST00000471686 272 ntBASIC3.78□□□□□ -1.8
USF1P22415 RPS4XP18-201ENST00000495480 763 ntBASIC3.78□□□□□ -1.8
USF1P22415 PPM1AP1-201ENST00000502740 1135 ntBASIC3.78□□□□□ -1.8
USF1P22415 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC3.78□□□□□ -1.8
USF1P22415 ACTR6P1-201ENST00000514311 1104 ntBASIC3.78□□□□□ -1.8
USF1P22415 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC3.78□□□□□ -1.8
USF1P22415 AC084824.1-201ENST00000550917 1005 ntBASIC3.78□□□□□ -1.8
USF1P22415 AC009137.2-201ENST00000568179 641 ntTSL 3 BASIC3.78□□□□□ -1.8
USF1P22415 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC3.78□□□□□ -1.8
USF1P22415 VN1R85P-201ENST00000601587 426 ntBASIC3.78□□□□□ -1.8
USF1P22415 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC3.78□□□□□ -1.8
USF1P22415 AC090953.1-201ENST00000604305 1092 ntBASIC3.78□□□□□ -1.8
USF1P22415 AL139286.1-201ENST00000604465 483 ntBASIC3.78□□□□□ -1.8
USF1P22415 AC024941.1-201ENST00000612250 334 ntBASIC3.78□□□□□ -1.8
USF1P22415 ZYXP1-201ENST00000617638 118 ntBASIC3.78□□□□□ -1.8
USF1P22415 AL445567.2-201ENST00000618935 498 ntBASIC3.78□□□□□ -1.8
USF1P22415 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.78□□□□□ -1.8
USF1P22415 AC140113.4-201ENST00000622087 222 ntBASIC3.78□□□□□ -1.8
USF1P22415 AL356121.2-201ENST00000624715 780 ntBASIC3.78□□□□□ -1.8
USF1P22415 AC006065.6-201ENST00000625201 545 ntBASIC3.78□□□□□ -1.8
USF1P22415 AC055839.1-201ENST00000634467 498 ntBASIC3.78□□□□□ -1.8
USF1P22415 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC3.78□□□□□ -1.8
USF1P22415 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
USF1P22415 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC3.78□□□□□ -1.8
USF1P22415 AC135352.1-201ENST00000506173 1418 ntBASIC3.78□□□□□ -1.8
USF1P22415 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USF1P22415 OFD1P6Y-201ENST00000432335 1637 ntTSL 2 BASIC3.77□□□□□ -1.81
USF1P22415 TTTY9B-201ENST00000433794 1637 ntTSL 2 BASIC3.77□□□□□ -1.81
USF1P22415 AL391684.1-202ENST00000641293 1636 ntBASIC3.77□□□□□ -1.81
USF1P22415 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USF1P22415 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USF1P22415 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
USF1P22415 RNA5SP515-201ENST00000364570 118 ntBASIC3.77□□□□□ -1.81
USF1P22415 RNU6-146P-201ENST00000384602 108 ntBASIC3.77□□□□□ -1.81
USF1P22415 MIR659-201ENST00000384963 97 ntBASIC3.77□□□□□ -1.81
USF1P22415 MIR195-201ENST00000385194 87 ntBASIC3.77□□□□□ -1.81
USF1P22415 RNA5SP372-201ENST00000390836 115 ntBASIC3.77□□□□□ -1.81
USF1P22415 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.77□□□□□ -1.81
USF1P22415 RPL23AP26-201ENST00000412728 464 ntBASIC3.77□□□□□ -1.81
USF1P22415 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USF1P22415 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.77□□□□□ -1.81
USF1P22415 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC3.77□□□□□ -1.81
USF1P22415 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.77□□□□□ -1.81
USF1P22415 FTH1P16-201ENST00000435241 552 ntBASIC3.77□□□□□ -1.81
USF1P22415 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.77□□□□□ -1.81
USF1P22415 AC069285.2-201ENST00000440210 275 ntBASIC3.77□□□□□ -1.81
USF1P22415 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USF1P22415 AL353898.1-201ENST00000444055 238 ntBASIC3.77□□□□□ -1.81
USF1P22415 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.77□□□□□ -1.81
USF1P22415 ISCUP1-201ENST00000454451 448 ntBASIC3.77□□□□□ -1.81
USF1P22415 AC105137.1-201ENST00000484355 562 ntBASIC3.77□□□□□ -1.81
USF1P22415 CDH12P2-201ENST00000504393 298 ntBASIC3.77□□□□□ -1.81
USF1P22415 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USF1P22415 MYL12AP1-201ENST00000518490 515 ntBASIC3.77□□□□□ -1.81
USF1P22415 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USF1P22415 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
USF1P22415 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC3.77□□□□□ -1.81
USF1P22415 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC3.77□□□□□ -1.81
USF1P22415 CYCSP28-201ENST00000534284 321 ntBASIC3.77□□□□□ -1.81
USF1P22415 CASP1-216ENST00000534497 825 ntTSL 5 BASIC3.77□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms