Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.29□□□□□ -1.72
LMX1BO60663 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
LMX1BO60663 VCAM1-202ENST00000347652 2812 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.29□□□□□ -1.72
LMX1BO60663 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 RN7SKP95-201ENST00000362860 303 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 RNU4-92P-201ENST00000363783 136 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 RNU4-51P-201ENST00000364206 140 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 SNORD116-12-201ENST00000384468 92 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 Z97832.1-201ENST00000402490 328 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 RNU2-50P-201ENST00000410494 143 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 RPS7P9-201ENST00000414704 586 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 TMBIM7P-201ENST00000418074 855 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 COX6CP17-201ENST00000421389 185 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC006065.1-201ENST00000422539 802 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 RGS17P1-201ENST00000423358 553 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 RHOT1P3-201ENST00000436571 331 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 GSTA7P-201ENST00000438425 448 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC4.29□□□□□ -1.72
LMX1BO60663 SEPT14P24-201ENST00000447236 180 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.29□□□□□ -1.72
LMX1BO60663 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC140172.1-201ENST00000502928 141 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AC091951.3-201ENST00000504093 246 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.29□□□□□ -1.72
LMX1BO60663 SNORA31.13-201ENST00000516624 135 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC021006.3-201ENST00000530771 192 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.29□□□□□ -1.72
LMX1BO60663 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC009117.1-201ENST00000563948 554 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AC023813.2-201ENST00000564321 469 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC4.29□□□□□ -1.72
LMX1BO60663 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC4.29□□□□□ -1.72
LMX1BO60663 AC007349.4-201ENST00000608114 532 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC4.29□□□□□ -1.72
LMX1BO60663 AL121890.3-201ENST00000618494 516 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AP002782.1-201ENST00000623107 614 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 AC092159.4-201ENST00000624944 550 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 GMFB-210ENST00000628554 639 ntTSL 4 BASIC4.29□□□□□ -1.72
LMX1BO60663 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC4.29□□□□□ -1.72
LMX1BO60663 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC4.29□□□□□ -1.72
LMX1BO60663 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.29□□□□□ -1.72
LMX1BO60663 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 AL390862.1-201ENST00000635467 1469 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.29□□□□□ -1.72
LMX1BO60663 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.29□□□□□ -1.72
LMX1BO60663 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LMX1BO60663 AL731566.1-201ENST00000620490 1937 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 IRF5P1-201ENST00000504852 2164 ntBASIC4.29□□□□□ -1.72
LMX1BO60663 LINC01355-201ENST00000566551 5444 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LMX1BO60663 Z98755.1-201ENST00000407015 1384 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 AL365214.2-201ENST00000433684 1365 ntTSL 2 BASIC4.28□□□□□ -1.72
LMX1BO60663 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LMX1BO60663 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC4.28□□□□□ -1.72
LMX1BO60663 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC4.28□□□□□ -1.72
LMX1BO60663 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LMX1BO60663 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LMX1BO60663 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
LMX1BO60663 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
LMX1BO60663 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
LMX1BO60663 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.28□□□□□ -1.72
LMX1BO60663 AC008549.2-201ENST00000333482 706 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 RNU6-249P-201ENST00000363016 102 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
LMX1BO60663 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
LMX1BO60663 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LMX1BO60663 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC4.28□□□□□ -1.72
LMX1BO60663 RPL7P27-201ENST00000403775 720 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 HMGB1P13-201ENST00000406019 642 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 HNRNPDP2-201ENST00000406475 478 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.28□□□□□ -1.72
LMX1BO60663 AL008987.1-201ENST00000415528 237 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC4.28□□□□□ -1.72
LMX1BO60663 ELOCP9-201ENST00000418624 239 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 AC090960.1-201ENST00000421072 306 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 CKS1BP6-201ENST00000424932 240 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.28□□□□□ -1.72
LMX1BO60663 C4BPAP2-201ENST00000428434 478 ntBASIC4.28□□□□□ -1.72
LMX1BO60663 AF230666.1-201ENST00000429151 786 ntTSL 2 BASIC4.28□□□□□ -1.72
LMX1BO60663 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.28□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms