Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
DKK3Q9UBP4 AL592182.3-201ENST00000642132 3304 ntBASIC5.3□□□□□ -1.56
DKK3Q9UBP4 AC011755.1-201ENST00000623763 2049 ntBASIC5.3□□□□□ -1.56
DKK3Q9UBP4 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC111188.2-201ENST00000529697 1387 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 PANDAR-201ENST00000629595 1506 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 ECT2L-201ENST00000367682 4343 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 Y_RNA.201-201ENST00000364052 96 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 RNU6-413P-201ENST00000384115 107 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 MIR765-201ENST00000390226 114 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 MIR550A3-201ENST00000390735 95 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 SNORA48.4-201ENST00000391089 134 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 U3.36-201ENST00000408418 213 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 FO393419.3-201ENST00000428741 282 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AL354977.2-201ENST00000430387 728 ntTSL 3 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AL161722.2-201ENST00000434731 981 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC022537.1-201ENST00000435271 446 ntTSL 3 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AL445567.1-201ENST00000439121 144 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AL357520.1-201ENST00000441557 453 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AL035407.2-201ENST00000454090 378 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AL133477.1-201ENST00000457472 514 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 RPL31P3-201ENST00000458430 332 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC113347.3-201ENST00000509113 148 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC006427.1-201ENST00000514359 712 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 RNU6-1308P-201ENST00000516817 103 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 MTCO3P15-201ENST00000526563 574 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 OR5AK3P-201ENST00000527486 1297 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 PDCL2P2-201ENST00000533651 189 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC002400.1-201ENST00000569310 726 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC011447.4-201ENST00000587562 111 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 TAS2R6P-201ENST00000605022 826 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AL049539.1-201ENST00000611964 459 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AL162574.1-201ENST00000615702 950 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC068870.2-201ENST00000620635 389 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC135068.12-201ENST00000637370 931 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 OR51F2-202ENST00000641672 1136 ntAPPRIS P2 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC073055.1-201ENST00000456901 1621 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 SMG1P6-201ENST00000532337 2930 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 AC005261.4-201ENST00000600047 1385 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 DDX43P2-201ENST00000604753 1354 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 OR51H2P-202ENST00000641424 3046 ntBASIC5.29□□□□□ -1.56
DKK3Q9UBP4 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
DKK3Q9UBP4 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.28□□□□□ -1.56
DKK3Q9UBP4 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.28□□□□□ -1.56
DKK3Q9UBP4 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
DKK3Q9UBP4 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
DKK3Q9UBP4 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
DKK3Q9UBP4 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
DKK3Q9UBP4 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.28□□□□□ -1.56
DKK3Q9UBP4 RPL23P2-201ENST00000320371 421 ntBASIC5.28□□□□□ -1.56
DKK3Q9UBP4 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
DKK3Q9UBP4 RN7SKP149-201ENST00000363008 344 ntBASIC5.28□□□□□ -1.56
DKK3Q9UBP4 RN7SKP145-201ENST00000363291 303 ntBASIC5.28□□□□□ -1.56
DKK3Q9UBP4 SNORD116.1-201ENST00000365628 92 ntBASIC5.28□□□□□ -1.56
DKK3Q9UBP4 SNORD116-4-201ENST00000384733 96 ntBASIC5.28□□□□□ -1.56
DKK3Q9UBP4 MIR142-201ENST00000384835 87 ntBASIC5.28□□□□□ -1.56
DKK3Q9UBP4 OR8V1P-201ENST00000395193 873 ntBASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms