Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 KLRC4-201ENST00000309384 930 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 DEFB128-201ENST00000334391 373 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 RNA5SP443-201ENST00000363083 132 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 RNA5SP123-201ENST00000363244 119 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 Y_RNA.201-201ENST00000364052 96 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 BTF3L4P1-201ENST00000413813 468 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AL161449.1-201ENST00000414531 1199 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 DDX39BP1-205ENST00000422507 192 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 RPP40P1-201ENST00000426762 456 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 RPL7P4-203ENST00000430239 730 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 MTCO3P21-201ENST00000430791 643 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 RPS29P10-201ENST00000439197 166 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 ELOCP8-201ENST00000439309 332 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 ELOCP15-201ENST00000442090 332 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC015724.1-201ENST00000478577 156 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 UBE2Q2P10-201ENST00000514854 900 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC011008.1-201ENST00000522026 439 ntTSL 3 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 MIR3934-201ENST00000579806 107 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC068790.2-201ENST00000602601 557 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AL590229.1-201ENST00000603497 542 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AP003973.1-201ENST00000604639 691 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC005084.1-201ENST00000605160 304 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AP004247.3-201ENST00000608682 624 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC091905.4-201ENST00000623432 202 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC091965.5-201ENST00000624785 342 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC099654.6-201ENST00000636487 512 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 Z99496.1-201ENST00000469424 1477 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 AC009962.1-201ENST00000567327 3813 ntBASIC5.43□□□□□ -1.54
TDP1Q9NUW8 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
TDP1Q9NUW8 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 RN7SKP104-201ENST00000362605 328 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 RNA5SP90-201ENST00000364801 99 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 RNU6-304P-201ENST00000364855 107 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 Y_RNA.408-201ENST00000383987 102 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 RNU6-1200P-201ENST00000384162 107 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 SNORA51.8-201ENST00000384234 132 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 MIR217-201ENST00000384817 110 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AL078599.1-201ENST00000402075 293 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 RN7SKP17-201ENST00000411242 351 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 GJA6P-201ENST00000415117 1042 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC019050.1-201ENST00000418508 492 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC048351.1-201ENST00000420064 602 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AL591503.2-201ENST00000442314 1005 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC073648.4-201ENST00000442655 781 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 PNPLA4P1-201ENST00000458328 305 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 snoU13.20-201ENST00000459180 104 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 RPL23AP71-201ENST00000470966 469 ntBASIC5.42□□□□□ -1.54
TDP1Q9NUW8 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
TDP1Q9NUW8 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms