Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 AC009318.3-201ENST00000616916 503 ntBASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 AC139792.2-201ENST00000624218 587 ntBASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 U6.107-201ENST00000637108 79 ntBASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 SAMMSON-226ENST00000642089 1582 ntBASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC6.17□□□□□ -1.42
SMC1BQ8NDV3 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AC009951.1-201ENST00000623674 2614 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 SSH2-204ENST00000540801 4538 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 RNA5SP453-201ENST00000362503 119 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 RNU6-1339P-201ENST00000363574 91 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 RNU6-83P-201ENST00000384568 112 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AC005165.1-203ENST00000423689 1281 ntTSL 3 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AL732292.1-201ENST00000426692 226 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 HSD52-202ENST00000436225 772 ntTSL 3 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 HMGB1P48-201ENST00000446155 598 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AL929288.2-201ENST00000446368 407 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AL583803.1-201ENST00000454262 334 ntTSL 3 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 OR52A4P-201ENST00000472867 958 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AC058823.1-201ENST00000485315 474 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 PGRMC2-204ENST00000503872 1028 ntTSL 3 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 MRPS33P3-201ENST00000513456 322 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 NDUFB4P12-201ENST00000513465 390 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 FABP5P12-201ENST00000515543 389 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 RNA5SP43-201ENST00000516559 110 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AL356057.1-201ENST00000533798 831 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 POLR2KP1-201ENST00000553226 168 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 NMNAT1P1-201ENST00000554095 876 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AC009019.1-202ENST00000568410 405 ntTSL 3 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AC010422.4-201ENST00000601420 533 ntTSL 3 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AP000255.1-201ENST00000610276 676 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AC007490.1-201ENST00000624321 703 ntBASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 MVP-219ENST00000629059 120 ntTSL 5 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.16□□□□□ -1.42
SMC1BQ8NDV3 AC100757.1-201ENST00000616872 1835 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 SLC25A46-208ENST00000513807 1546 ntTSL 2 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 SNORD113-6-201ENST00000363345 75 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 SNORA62.2-201ENST00000364672 152 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 SNORD116.1-201ENST00000365628 92 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 RNU5A-2P-201ENST00000384337 116 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 MIR137-201ENST00000385223 102 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 RPL32P23-201ENST00000397237 405 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 HMGB3P7-201ENST00000400214 611 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 SNORA11.1-201ENST00000408133 129 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 LSM5-205ENST00000409952 687 ntTSL 4 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 RNU2-22P-201ENST00000411266 212 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 AC027644.1-201ENST00000419595 298 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 GAPDHP49-201ENST00000421421 961 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 CDY14P-201ENST00000431260 1014 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 RPS29P10-201ENST00000439197 166 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 CDY12P-201ENST00000440679 1015 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 CDY13P-201ENST00000445813 1015 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 AL133217.1-201ENST00000450980 425 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 CDY23P-201ENST00000451661 1014 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 NECAP1P2-201ENST00000455668 727 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 AC109327.1-201ENST00000471666 403 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 FSBP-201ENST00000481490 1158 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 AC006427.1-201ENST00000514359 712 ntBASIC6.15□□□□□ -1.42
SMC1BQ8NDV3 RN7SKP276-201ENST00000516242 268 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms