Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
FOXF1Q12946 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
FOXF1Q12946 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.7□□□□□ -1.82
FOXF1Q12946 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC3.7□□□□□ -1.82
FOXF1Q12946 USP9YP4-201ENST00000424401 1745 ntBASIC3.7□□□□□ -1.82
FOXF1Q12946 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC3.69□□□□□ -1.82
FOXF1Q12946 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
FOXF1Q12946 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXF1Q12946 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXF1Q12946 API5-210ENST00000534600 1760 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXF1Q12946 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AC087190.4-201ENST00000574616 8334 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 SNORA60-201ENST00000362396 134 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 SNORA37-201ENST00000384504 129 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 MT-RNR1-201ENST00000389680 954 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 ENSAP1-201ENST00000392855 326 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AL358472.1-201ENST00000431295 329 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AC034228.3-201ENST00000446275 562 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXF1Q12946 LINC01878-202ENST00000453965 405 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 RPS27AP18-201ENST00000515536 459 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AC008126.1-201ENST00000549019 480 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 PARP1P2-201ENST00000556806 195 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 AC007599.1-201ENST00000568688 1174 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 AC012417.1-201ENST00000582307 1039 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXF1Q12946 MIR4727-201ENST00000622232 55 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC3.69□□□□□ -1.82
FOXF1Q12946 AL606537.1-201ENST00000607258 2011 ntBASIC3.69□□□□□ -1.82
FOXF1Q12946 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXF1Q12946 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
FOXF1Q12946 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC3.69□□□□□ -1.82
FOXF1Q12946 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
FOXF1Q12946 SLAIN1-202ENST00000314070 2118 ntAPPRIS ALT2 TSL 2 BASIC3.68□□□□□ -1.82
FOXF1Q12946 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
FOXF1Q12946 SLC15A5-201ENST00000344941 2923 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
FOXF1Q12946 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.68□□□□□ -1.82
FOXF1Q12946 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
FOXF1Q12946 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.68□□□□□ -1.82
FOXF1Q12946 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
FOXF1Q12946 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.68□□□□□ -1.82
FOXF1Q12946 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
FOXF1Q12946 TMEM251-201ENST00000283534 909 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 PLET1-201ENST00000338832 1215 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
FOXF1Q12946 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXF1Q12946 SNORA68.2-201ENST00000391263 128 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 RNA5SP317-201ENST00000410176 116 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 RNA5SP311-201ENST00000411290 116 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 RCC2P2-201ENST00000422174 918 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.68□□□□□ -1.82
FOXF1Q12946 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXF1Q12946 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXF1Q12946 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXF1Q12946 AC114755.5-201ENST00000447760 831 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 RPS7P7-201ENST00000463499 571 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 RN7SL860P-201ENST00000473738 223 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXF1Q12946 AC139783.2-201ENST00000504847 1145 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 AC092593.2-201ENST00000513866 913 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 MTCO1P35-201ENST00000515270 228 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 HNRNPKP5-201ENST00000515300 253 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 RNA5SP315-201ENST00000516340 116 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 RNA5SP312-201ENST00000517068 116 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXF1Q12946 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXF1Q12946 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.68□□□□□ -1.82
FOXF1Q12946 UBTFL9-201ENST00000534504 1148 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.68□□□□□ -1.82
FOXF1Q12946 MIR4697-201ENST00000582977 78 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXF1Q12946 RNU4-89P-201ENST00000607443 133 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC3.68□□□□□ -1.82
FOXF1Q12946 AC095038.2-201ENST00000621464 1070 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 AC105105.5-201ENST00000622635 1294 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 MIR492-201ENST00000638676 116 ntBASIC3.68□□□□□ -1.82
FOXF1Q12946 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
FOXF1Q12946 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXF1Q12946 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
FOXF1Q12946 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC3.67□□□□□ -1.82
FOXF1Q12946 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC3.67□□□□□ -1.82
FOXF1Q12946 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms