Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 C4orf47-201ENST00000378850 1134 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 RNU6-185P-201ENST00000384421 107 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 SNORA11-201ENST00000408789 128 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 E2F6P2-201ENST00000420708 748 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC004938.1-201ENST00000438468 308 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 RPL6P5-201ENST00000445678 828 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AL365204.2-201ENST00000446754 687 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 RPS20P4-201ENST00000461659 355 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 RPL21P47-201ENST00000483696 477 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 MTATP6P9-201ENST00000515039 680 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 RNU6-334P-201ENST00000517072 102 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC068339.2-201ENST00000534395 618 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC008083.2-201ENST00000546707 476 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC087477.6-201ENST00000559595 843 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC105129.1-201ENST00000560250 297 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 KPNA2P3-201ENST00000584190 848 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC020910.2-201ENST00000603635 610 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 IGKV2OR2-2-201ENST00000605025 300 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC021851.1-201ENST00000608537 1082 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC005962.2-201ENST00000611427 652 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC005156.1-201ENST00000613371 573 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AL133243.1-201ENST00000614487 366 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AP004607.9-201ENST00000618202 316 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AL049777.1-201ENST00000622740 518 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC000123.3-201ENST00000624029 4975 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 ZFRP1-201ENST00000457579 2970 ntBASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.53□□□□□ -1.68
CCDC3Q9BQI4 AC108467.2-201ENST00000617640 1597 ntBASIC4.53□□□□□ -1.69
CCDC3Q9BQI4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 RAD17P1-201ENST00000418130 2042 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 METTL21EP-201ENST00000298105 713 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 U3.35-201ENST00000408405 208 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 BX664727.1-201ENST00000416024 466 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 MTCO2P1-201ENST00000424648 477 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 DPY19L1P2-201ENST00000426647 915 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC022022.1-201ENST00000430304 178 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 RPL7P33-201ENST00000444159 742 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC069540.1-201ENST00000446320 988 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AL096829.2-201ENST00000446582 742 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC092685.1-201ENST00000447960 1243 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 RPL7P55-201ENST00000450522 746 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 PPIAP21-201ENST00000464473 501 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC011276.1-201ENST00000469688 323 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC104763.1-201ENST00000475274 360 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 RPL21P6-201ENST00000479171 504 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AL161747.1-201ENST00000480068 358 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 RPL36AP41-201ENST00000493820 306 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC025674.1-201ENST00000507074 324 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC112518.2-201ENST00000508565 425 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 C1GALT1P2-201ENST00000510813 1104 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 HIGD1AP18-201ENST00000520730 278 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 OR8A2P-201ENST00000528631 952 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC126178.1-201ENST00000548722 926 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC090618.1-201ENST00000571972 585 ntTSL 2 BASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 AC023575.1-201ENST00000580510 358 ntBASIC4.52□□□□□ -1.69
CCDC3Q9BQI4 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms