Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC005086.4-201ENST00000623065 213 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
HOXC9P31274 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC9P31274 PATE1-201ENST00000305738 1527 ntAPPRIS P2 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC9P31274 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC5.57□□□□□ -1.52
HOXC9P31274 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HOXC9P31274 SUPT16HP1-201ENST00000537175 3133 ntBASIC5.57□□□□□ -1.52
HOXC9P31274 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
HOXC9P31274 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC9P31274 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC9P31274 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXC9P31274 AC010300.1-201ENST00000600671 5134 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 RN7SKP186-201ENST00000365371 303 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
HOXC9P31274 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXC9P31274 AL158840.1-202ENST00000425754 694 ntTSL 3 BASIC5.56□□□□□ -1.52
HOXC9P31274 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXC9P31274 AL445584.1-201ENST00000431451 330 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXC9P31274 ARL5AP3-201ENST00000439327 386 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 AC006011.1-201ENST00000442758 349 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXC9P31274 RPS27AP15-201ENST00000447672 466 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 MTND5P8-201ENST00000449817 1083 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 NREP-207ENST00000450761 636 ntAPPRIS P1 TSL 4 BASIC5.56□□□□□ -1.52
HOXC9P31274 AP002345.1-201ENST00000456493 928 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 AC112206.1-201ENST00000468416 477 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 BNIP3P41-201ENST00000503774 571 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 HMGB1P47-201ENST00000511281 589 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC5.56□□□□□ -1.52
HOXC9P31274 RNA5SP143-201ENST00000516936 115 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC5.56□□□□□ -1.52
HOXC9P31274 CCDC58P3-201ENST00000590792 430 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 AL512506.1-201ENST00000613918 449 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 MIR6500-201ENST00000622700 86 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC9P31274 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC9P31274 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXC9P31274 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC9P31274 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXC9P31274 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
HOXC9P31274 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HOXC9P31274 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.56□□□□□ -1.52
HOXC9P31274 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.56□□□□□ -1.52
HOXC9P31274 AC092162.3-201ENST00000624511 1624 ntBASIC5.56□□□□□ -1.52
HOXC9P31274 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 ENKUR-201ENST00000331161 3382 ntAPPRIS P2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXC9P31274 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 SNORD96B-201ENST00000386148 79 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 MIR670-201ENST00000390142 98 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 TCEA1P4-201ENST00000415066 844 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXC9P31274 DNAJA1P1-201ENST00000425106 1187 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 MTCO1P51-201ENST00000427672 1060 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXC9P31274 ABCF2P2-201ENST00000450549 296 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 AC010894.4-201ENST00000454203 457 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXC9P31274 AC022034.3-201ENST00000471393 478 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 AC108022.1-201ENST00000493466 478 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXC9P31274 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXC9P31274 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 RNU6-491P-201ENST00000516099 110 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXC9P31274 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXC9P31274 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXC9P31274 AC092868.3-201ENST00000560515 784 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 HSPE1P5-201ENST00000561489 272 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.55□□□□□ -1.52
HOXC9P31274 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC5.55□□□□□ -1.52
HOXC9P31274 AL606490.9-201ENST00000603331 271 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 QTRT1P1-201ENST00000604344 1078 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC5.55□□□□□ -1.52
HOXC9P31274 AC019278.1-201ENST00000623516 479 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXC9P31274 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
HOXC9P31274 EED-206ENST00000527888 1422 ntTSL 2 BASIC5.55□□□□□ -1.52
HOXC9P31274 AC008079.2-201ENST00000623543 20396 ntBASIC5.55□□□□□ -1.52
HOXC9P31274 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXC9P31274 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXC9P31274 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXC9P31274 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXC9P31274 NAMPTP1-201ENST00000440465 2514 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
HOXC9P31274 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HOXC9P31274 AP000473.2-201ENST00000602659 1537 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
HOXC9P31274 HSPE1P12-201ENST00000412576 301 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXC9P31274 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXC9P31274 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXC9P31274 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXC9P31274 NDUFAF4P2-201ENST00000445374 520 ntBASIC5.54□□□□□ -1.52
HOXC9P31274 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms