Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC4.97□□□□□ -1.61
COL5A3P25940 ADGRF5-201ENST00000265417 5668 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A3P25940 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
COL5A3P25940 AL035425.3-201ENST00000564206 4996 ntBASIC4.96□□□□□ -1.61
COL5A3P25940 AP002001.2-201ENST00000529025 1469 ntBASIC4.96□□□□□ -1.61
COL5A3P25940 AC073346.2-201ENST00000624724 2058 ntBASIC4.96□□□□□ -1.61
COL5A3P25940 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
COL5A3P25940 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC4.96□□□□□ -1.61
COL5A3P25940 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
COL5A3P25940 AC023632.6-201ENST00000624338 2177 ntBASIC4.96□□□□□ -1.62
COL5A3P25940 MIR218-2-201ENST00000385006 110 ntBASIC4.96□□□□□ -1.62
COL5A3P25940 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.96□□□□□ -1.62
COL5A3P25940 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL5A3P25940 AC090602.1-201ENST00000469695 252 ntBASIC4.96□□□□□ -1.62
COL5A3P25940 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.96□□□□□ -1.62
COL5A3P25940 AC005726.1-201ENST00000494679 427 ntBASIC4.96□□□□□ -1.62
COL5A3P25940 AL358832.1-201ENST00000497800 389 ntBASIC4.96□□□□□ -1.62
COL5A3P25940 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.96□□□□□ -1.62
COL5A3P25940 WBP1LP4-201ENST00000505043 344 ntBASIC4.96□□□□□ -1.62
COL5A3P25940 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC4.96□□□□□ -1.62
COL5A3P25940 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC4.96□□□□□ -1.62
COL5A3P25940 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.96□□□□□ -1.62
COL5A3P25940 AC243756.2-201ENST00000618406 463 ntBASIC4.96□□□□□ -1.62
COL5A3P25940 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL5A3P25940 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC4.96□□□□□ -1.62
COL5A3P25940 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.96□□□□□ -1.62
COL5A3P25940 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC4.96□□□□□ -1.62
COL5A3P25940 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
COL5A3P25940 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
COL5A3P25940 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
COL5A3P25940 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.96□□□□□ -1.62
COL5A3P25940 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
COL5A3P25940 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL5A3P25940 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL5A3P25940 MIR490-201ENST00000384865 128 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 AL591419.1-201ENST00000427423 339 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 HIGD1AP4-201ENST00000430194 280 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 HSPD1P21-201ENST00000436541 245 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 RPL23AP89-201ENST00000439324 255 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC4.95□□□□□ -1.62
COL5A3P25940 LINC01210-201ENST00000465283 625 ntTSL 2 BASIC4.95□□□□□ -1.62
COL5A3P25940 AC012158.1-204ENST00000483430 465 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 AC037471.2-201ENST00000564941 598 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 VN1R92P-201ENST00000598511 928 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 AC243654.2-201ENST00000612843 443 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 AC079684.1-201ENST00000621405 437 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 AC124312.6-202ENST00000623624 418 ntBASIC4.95□□□□□ -1.62
COL5A3P25940 PCBP1-AS1-348ENST00000629506 667 ntTSL 5 BASIC4.95□□□□□ -1.62
COL5A3P25940 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.95□□□□□ -1.62
COL5A3P25940 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL5A3P25940 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL5A3P25940 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
COL5A3P25940 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
COL5A3P25940 AC096664.2-201ENST00000411843 406 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 ATP5A1P2-201ENST00000412323 255 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 BX119904.3-201ENST00000428194 957 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 TMX2P1-201ENST00000436507 708 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 PDSS1P2-201ENST00000449397 678 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.94□□□□□ -1.62
COL5A3P25940 AC025554.1-201ENST00000505641 188 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC4.94□□□□□ -1.62
COL5A3P25940 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL5A3P25940 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.94□□□□□ -1.62
COL5A3P25940 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.94□□□□□ -1.62
COL5A3P25940 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.94□□□□□ -1.62
COL5A3P25940 AC079171.1-201ENST00000568788 914 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 AC020914.6-201ENST00000594327 272 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.94□□□□□ -1.62
COL5A3P25940 AL137849.1-201ENST00000604767 169 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 AC063952.1-203ENST00000634410 658 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL5A3P25940 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
COL5A3P25940 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.94□□□□□ -1.62
COL5A3P25940 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL5A3P25940 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 AC112721.2-201ENST00000409910 541 ntTSL 4 BASIC4.94□□□□□ -1.62
COL5A3P25940 AL390879.2-203ENST00000426943 1121 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
COL5A3P25940 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC4.94□□□□□ -1.62
COL5A3P25940 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.94□□□□□ -1.62
COL5A3P25940 STX3-204ENST00000530221 534 ntTSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 DUX4L52-201ENST00000549363 777 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.94□□□□□ -1.62
COL5A3P25940 AP001043.1-201ENST00000626259 773 ntTSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.94□□□□□ -1.62
COL5A3P25940 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL5A3P25940 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
COL5A3P25940 PRO1804-201ENST00000623780 2050 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 Z95327.2-201ENST00000414579 1873 ntBASIC4.94□□□□□ -1.62
COL5A3P25940 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A3P25940 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL5A3P25940 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
COL5A3P25940 CLCA2-201ENST00000370565 4025 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A3P25940 CPS1-204ENST00000451903 4770 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms