Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC5.2□□□□□ -1.58
BDNFP23560 TBCAP2-201ENST00000416175 326 ntBASIC5.2□□□□□ -1.58
BDNFP23560 OR2AH1P-201ENST00000425717 928 ntBASIC5.2□□□□□ -1.58
BDNFP23560 AC234779.1-201ENST00000425910 285 ntBASIC5.2□□□□□ -1.58
BDNFP23560 UBE2V1P1-201ENST00000430836 445 ntBASIC5.2□□□□□ -1.58
BDNFP23560 AL512661.1-201ENST00000434586 1253 ntBASIC5.2□□□□□ -1.58
BDNFP23560 LBX1-AS1-202ENST00000434878 418 ntTSL 5 BASIC5.2□□□□□ -1.58
BDNFP23560 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC5.2□□□□□ -1.58
BDNFP23560 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC5.2□□□□□ -1.58
BDNFP23560 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.2□□□□□ -1.58
BDNFP23560 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC5.2□□□□□ -1.58
BDNFP23560 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.2□□□□□ -1.58
BDNFP23560 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
BDNFP23560 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.2□□□□□ -1.58
BDNFP23560 RN7SL346P-201ENST00000491561 294 ntBASIC5.2□□□□□ -1.58
BDNFP23560 AC069304.1-201ENST00000491593 704 ntBASIC5.2□□□□□ -1.58
BDNFP23560 ENPP7P11-201ENST00000505915 627 ntBASIC5.2□□□□□ -1.58
BDNFP23560 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC5.2□□□□□ -1.58
BDNFP23560 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
BDNFP23560 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC5.2□□□□□ -1.58
BDNFP23560 LINC02490-201ENST00000559915 601 ntTSL 3 BASIC5.2□□□□□ -1.58
BDNFP23560 MIR4737-201ENST00000583979 81 ntBASIC5.2□□□□□ -1.58
BDNFP23560 AC017100.2-201ENST00000584628 355 ntBASIC5.2□□□□□ -1.58
BDNFP23560 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC5.2□□□□□ -1.58
BDNFP23560 AC011453.2-201ENST00000603737 729 ntBASIC5.2□□□□□ -1.58
BDNFP23560 AC112503.1-201ENST00000608436 391 ntBASIC5.2□□□□□ -1.58
BDNFP23560 VN1R9P-201ENST00000614184 867 ntBASIC5.2□□□□□ -1.58
BDNFP23560 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.2□□□□□ -1.58
BDNFP23560 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.2□□□□□ -1.58
BDNFP23560 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
BDNFP23560 PRUNE2-204ENST00000376718 12584 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
BDNFP23560 OR11H5P-202ENST00000641612 1325 ntBASIC5.2□□□□□ -1.58
BDNFP23560 NOL8P1-201ENST00000508336 3529 ntBASIC5.19□□□□□ -1.58
BDNFP23560 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
BDNFP23560 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
BDNFP23560 OXR1-201ENST00000297447 1944 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
BDNFP23560 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
BDNFP23560 LINC02532-209ENST00000602934 2464 ntTSL 2 BASIC5.19□□□□□ -1.58
BDNFP23560 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.19□□□□□ -1.58
BDNFP23560 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
BDNFP23560 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
BDNFP23560 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
BDNFP23560 SNORA73.1-201ENST00000363107 205 ntBASIC5.19□□□□□ -1.58
BDNFP23560 RNA5SP87-201ENST00000384155 118 ntBASIC5.19□□□□□ -1.58
BDNFP23560 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.19□□□□□ -1.58
BDNFP23560 RPS24P12-201ENST00000402084 394 ntBASIC5.19□□□□□ -1.58
BDNFP23560 QRSL1P2-201ENST00000418582 964 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC5.19□□□□□ -1.58
BDNFP23560 AC007559.1-201ENST00000428736 355 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AC073052.1-201ENST00000440417 714 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC5.19□□□□□ -1.58
BDNFP23560 RPS26P56-201ENST00000444468 240 ntBASIC5.19□□□□□ -1.58
BDNFP23560 MTND1P33-201ENST00000446251 917 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
BDNFP23560 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5.19□□□□□ -1.58
BDNFP23560 SLC25A18P1-201ENST00000449385 454 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AC010733.1-201ENST00000451515 401 ntBASIC5.19□□□□□ -1.58
BDNFP23560 CEACAMP6-201ENST00000452007 574 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AC234781.3-201ENST00000452540 973 ntBASIC5.19□□□□□ -1.58
BDNFP23560 snoU13.7-201ENST00000459220 104 ntBASIC5.19□□□□□ -1.58
BDNFP23560 CREM-226ENST00000469949 721 ntTSL 3 BASIC5.19□□□□□ -1.58
BDNFP23560 RPL23AP37-201ENST00000479658 549 ntBASIC5.19□□□□□ -1.58
BDNFP23560 MYL12BP2-201ENST00000503948 512 ntBASIC5.19□□□□□ -1.58
BDNFP23560 SNX5P1-201ENST00000505757 1041 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC5.19□□□□□ -1.58
BDNFP23560 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC5.19□□□□□ -1.58
BDNFP23560 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.19□□□□□ -1.58
BDNFP23560 SOD1P3-201ENST00000518682 454 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.19□□□□□ -1.58
BDNFP23560 OR8L1P-201ENST00000534005 955 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
BDNFP23560 AL133279.2-201ENST00000556546 428 ntTSL 3 BASIC5.19□□□□□ -1.58
BDNFP23560 AC005972.3-201ENST00000606304 481 ntBASIC5.19□□□□□ -1.58
BDNFP23560 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.19□□□□□ -1.58
BDNFP23560 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
BDNFP23560 AC018529.3-201ENST00000624212 2254 ntBASIC5.19□□□□□ -1.58
BDNFP23560 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.19□□□□□ -1.58
BDNFP23560 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
BDNFP23560 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.19□□□□□ -1.58
BDNFP23560 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
BDNFP23560 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
BDNFP23560 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
BDNFP23560 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
BDNFP23560 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC5.18□□□□□ -1.58
BDNFP23560 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.18□□□□□ -1.58
BDNFP23560 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
BDNFP23560 MTND5P28-201ENST00000438005 1594 ntBASIC5.18□□□□□ -1.58
BDNFP23560 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.18□□□□□ -1.58
BDNFP23560 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
BDNFP23560 Y_RNA.110-201ENST00000363220 99 ntBASIC5.18□□□□□ -1.58
BDNFP23560 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
BDNFP23560 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.18□□□□□ -1.58
BDNFP23560 RNU6-1293P-201ENST00000384077 107 ntBASIC5.18□□□□□ -1.58
BDNFP23560 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
BDNFP23560 AC013442.1-201ENST00000397347 228 ntBASIC5.18□□□□□ -1.58
BDNFP23560 AL080315.1-201ENST00000406055 466 ntBASIC5.18□□□□□ -1.58
BDNFP23560 MIR1250-201ENST00000408098 113 ntBASIC5.18□□□□□ -1.58
BDNFP23560 RPL37P18-201ENST00000411602 243 ntBASIC5.18□□□□□ -1.58
BDNFP23560 AC073071.1-201ENST00000412410 388 ntTSL 3 BASIC5.18□□□□□ -1.58
BDNFP23560 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms