Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC022022.1-201ENST00000430304 178 ntBASIC4.61□□□□□ -1.67
MSH3P20585 MTCO1P43-201ENST00000431831 488 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC4.61□□□□□ -1.67
MSH3P20585 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.61□□□□□ -1.67
MSH3P20585 AC004854.1-201ENST00000440356 349 ntBASIC4.61□□□□□ -1.67
MSH3P20585 ARL4AP3-201ENST00000441452 574 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AC023512.1-201ENST00000444513 499 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AC044797.1-201ENST00000445744 679 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AL035551.1-201ENST00000446931 348 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.61□□□□□ -1.67
MSH3P20585 HMGB1P5-202ENST00000451497 985 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.61□□□□□ -1.67
MSH3P20585 SBDSP1-204ENST00000453858 737 ntBASIC4.61□□□□□ -1.67
MSH3P20585 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.61□□□□□ -1.67
MSH3P20585 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC4.61□□□□□ -1.67
MSH3P20585 RPL23AP65-201ENST00000475608 468 ntBASIC4.61□□□□□ -1.67
MSH3P20585 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 RPL21P47-201ENST00000483696 477 ntBASIC4.61□□□□□ -1.67
MSH3P20585 PRELID3BP6-201ENST00000503839 571 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AC097512.1-203ENST00000506425 957 ntTSL 3 BASIC4.61□□□□□ -1.67
MSH3P20585 MGST2-204ENST00000506797 634 ntTSL 2 BASIC4.61□□□□□ -1.67
MSH3P20585 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC4.61□□□□□ -1.67
MSH3P20585 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC4.61□□□□□ -1.67
MSH3P20585 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 CIR1P1-201ENST00000524055 1133 ntBASIC4.61□□□□□ -1.67
MSH3P20585 CARD16-203ENST00000525374 503 ntTSL 3 BASIC4.61□□□□□ -1.67
MSH3P20585 AP000916.1-201ENST00000533869 835 ntBASIC4.61□□□□□ -1.67
MSH3P20585 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.61□□□□□ -1.67
MSH3P20585 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.61□□□□□ -1.67
MSH3P20585 AC106734.1-201ENST00000568646 663 ntBASIC4.61□□□□□ -1.67
MSH3P20585 RN7SL339P-201ENST00000580597 296 ntBASIC4.61□□□□□ -1.67
MSH3P20585 RN7SL52P-201ENST00000584271 284 ntBASIC4.61□□□□□ -1.67
MSH3P20585 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.61□□□□□ -1.67
MSH3P20585 AC011492.1-201ENST00000600023 315 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AC087283.1-201ENST00000604029 1074 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AC018754.1-201ENST00000607486 925 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AL121652.1-201ENST00000608851 448 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AC124016.2-201ENST00000610058 665 ntBASIC4.61□□□□□ -1.67
MSH3P20585 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
MSH3P20585 AC005911.1-201ENST00000619883 456 ntTSL 5 BASIC4.61□□□□□ -1.67
MSH3P20585 AC140113.4-201ENST00000622087 222 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AL359757.1-201ENST00000623176 255 ntBASIC4.61□□□□□ -1.67
MSH3P20585 AC126544.2-201ENST00000625174 749 ntBASIC4.61□□□□□ -1.67
MSH3P20585 LINC00976-202ENST00000628064 534 ntTSL 5 BASIC4.61□□□□□ -1.67
MSH3P20585 U3.53-201ENST00000628922 216 ntBASIC4.61□□□□□ -1.67
MSH3P20585 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.61□□□□□ -1.67
MSH3P20585 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
MSH3P20585 DDX18P3-201ENST00000404856 2007 ntBASIC4.61□□□□□ -1.67
MSH3P20585 SPATA2P1-201ENST00000431223 2055 ntBASIC4.61□□□□□ -1.67
MSH3P20585 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.61□□□□□ -1.67
MSH3P20585 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.61□□□□□ -1.67
MSH3P20585 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.61□□□□□ -1.67
MSH3P20585 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
MSH3P20585 ZNF137P-201ENST00000456718 1920 ntBASIC4.6□□□□□ -1.67
MSH3P20585 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 AC099792.1-203ENST00000634701 2183 ntTSL 5 BASIC4.6□□□□□ -1.67
MSH3P20585 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 RNU6-468P-201ENST00000384003 109 ntBASIC4.6□□□□□ -1.67
MSH3P20585 RNU6-481P-201ENST00000384194 107 ntBASIC4.6□□□□□ -1.67
MSH3P20585 RNU6-1005P-201ENST00000384519 107 ntBASIC4.6□□□□□ -1.67
MSH3P20585 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
MSH3P20585 MIR937-201ENST00000401271 86 ntBASIC4.6□□□□□ -1.67
MSH3P20585 AL355615.1-201ENST00000406187 641 ntBASIC4.6□□□□□ -1.67
MSH3P20585 CEACAMP8-201ENST00000413902 580 ntBASIC4.6□□□□□ -1.67
MSH3P20585 AL590806.1-201ENST00000415818 853 ntBASIC4.6□□□□□ -1.67
MSH3P20585 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC4.6□□□□□ -1.67
MSH3P20585 AC106883.1-201ENST00000418805 562 ntBASIC4.6□□□□□ -1.67
MSH3P20585 MTCO2P17-201ENST00000424336 677 ntBASIC4.6□□□□□ -1.67
MSH3P20585 FO393414.1-201ENST00000428697 1184 ntBASIC4.6□□□□□ -1.67
MSH3P20585 PPIAP13-201ENST00000434706 478 ntBASIC4.6□□□□□ -1.67
MSH3P20585 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.6□□□□□ -1.67
MSH3P20585 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.6□□□□□ -1.67
MSH3P20585 AC010326.1-201ENST00000462726 602 ntBASIC4.6□□□□□ -1.67
MSH3P20585 RPL12P20-201ENST00000475538 479 ntBASIC4.6□□□□□ -1.67
MSH3P20585 RPL36AP41-201ENST00000493820 306 ntBASIC4.6□□□□□ -1.67
MSH3P20585 HAUS1P1-201ENST00000505275 832 ntBASIC4.6□□□□□ -1.67
MSH3P20585 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.6□□□□□ -1.67
MSH3P20585 AC069306.1-201ENST00000507006 843 ntBASIC4.6□□□□□ -1.67
MSH3P20585 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.6□□□□□ -1.67
MSH3P20585 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.6□□□□□ -1.67
MSH3P20585 RNA5SP360-201ENST00000516555 118 ntBASIC4.6□□□□□ -1.67
MSH3P20585 AF186190.1-201ENST00000517470 480 ntBASIC4.6□□□□□ -1.67
MSH3P20585 OR5M2P-201ENST00000529003 936 ntBASIC4.6□□□□□ -1.67
MSH3P20585 CCDC7-207ENST00000535327 700 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.6□□□□□ -1.67
MSH3P20585 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC4.6□□□□□ -1.67
MSH3P20585 AC087894.1-201ENST00000538359 518 ntBASIC4.6□□□□□ -1.67
MSH3P20585 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
MSH3P20585 AC023825.1-201ENST00000566704 1030 ntBASIC4.6□□□□□ -1.67
MSH3P20585 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.6□□□□□ -1.67
MSH3P20585 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.6□□□□□ -1.67
MSH3P20585 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.6□□□□□ -1.67
MSH3P20585 BNIP3P32-201ENST00000600015 554 ntBASIC4.6□□□□□ -1.67
MSH3P20585 AC084373.1-201ENST00000603311 235 ntBASIC4.6□□□□□ -1.67
MSH3P20585 AC233280.2-201ENST00000603917 1070 ntBASIC4.6□□□□□ -1.67
MSH3P20585 AC133552.5-201ENST00000604266 540 ntBASIC4.6□□□□□ -1.67
MSH3P20585 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms