Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HMGB1P5-201ENST00000255320 642 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HMGB1P09429 ANKRD36P1-201ENST00000344424 659 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 RNA5SP183-201ENST00000362452 119 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC6.21□□□□□ -1.42
HMGB1P09429 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HMGB1P09429 SNORA67-201ENST00000384423 137 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
HMGB1P09429 AL080315.1-201ENST00000406055 466 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 RPL12P9-201ENST00000412942 488 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 AL136133.1-201ENST00000413694 376 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC6.21□□□□□ -1.42
HMGB1P09429 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC6.21□□□□□ -1.42
HMGB1P09429 RPS27AP12-201ENST00000429552 465 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC6.21□□□□□ -1.42
HMGB1P09429 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.21□□□□□ -1.42
HMGB1P09429 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC6.21□□□□□ -1.42
HMGB1P09429 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HMGB1P09429 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC6.21□□□□□ -1.42
HMGB1P09429 ATP5G1P3-201ENST00000463301 410 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 RPS26P39-201ENST00000469206 341 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 AC104109.1-201ENST00000498563 436 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC6.21□□□□□ -1.42
HMGB1P09429 BX510359.5-201ENST00000515651 304 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 RNA5SP230-201ENST00000517039 122 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 AC012400.1-201ENST00000518452 381 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.21□□□□□ -1.42
HMGB1P09429 IGKV3D-34-201ENST00000522638 302 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC6.21□□□□□ -1.42
HMGB1P09429 AL353699.1-201ENST00000529078 365 ntTSL 3 BASIC6.21□□□□□ -1.42
HMGB1P09429 OR4A45P-201ENST00000529954 901 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC6.21□□□□□ -1.42
HMGB1P09429 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HMGB1P09429 AC022884.2-201ENST00000578535 580 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 AC073387.2-201ENST00000604797 784 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC6.21□□□□□ -1.42
HMGB1P09429 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC6.21□□□□□ -1.42
HMGB1P09429 METTL15-211ENST00000634762 718 ntTSL 5 BASIC6.21□□□□□ -1.42
HMGB1P09429 AC138649.5-201ENST00000637456 137 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC6.21□□□□□ -1.42
HMGB1P09429 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HMGB1P09429 AL391684.1-202ENST00000641293 1636 ntBASIC6.21□□□□□ -1.42
HMGB1P09429 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
HMGB1P09429 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC6.2□□□□□ -1.42
HMGB1P09429 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC6.2□□□□□ -1.42
HMGB1P09429 UGT2A2-201ENST00000604021 1544 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HMGB1P09429 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.2□□□□□ -1.42
HMGB1P09429 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HMGB1P09429 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HMGB1P09429 AL359893.1-201ENST00000447628 1580 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HMGB1P09429 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC6.2□□□□□ -1.42
HMGB1P09429 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC6.2□□□□□ -1.42
HMGB1P09429 RNVU1-3-201ENST00000364313 161 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
HMGB1P09429 FCF1P2-201ENST00000415284 583 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AC003075.1-202ENST00000419382 720 ntTSL 3 BASIC6.2□□□□□ -1.42
HMGB1P09429 MTCYBP24-201ENST00000420387 1106 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 TCEA1P2-201ENST00000420496 906 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 OFD1P2Y-201ENST00000421895 1149 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 TEX41-204ENST00000423031 491 ntTSL 4 BASIC6.2□□□□□ -1.42
HMGB1P09429 RPS12P5-201ENST00000423449 371 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 RPL21P43-201ENST00000425440 472 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AC009238.2-201ENST00000431026 355 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC6.2□□□□□ -1.42
HMGB1P09429 RPS26P41-201ENST00000450370 284 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AC013460.1-205ENST00000450695 518 ntTSL 4 BASIC6.2□□□□□ -1.42
HMGB1P09429 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC6.2□□□□□ -1.42
HMGB1P09429 TPT1P1-201ENST00000458495 518 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AP000873.1-201ENST00000463987 400 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AC114741.1-201ENST00000504357 464 ntTSL 2 BASIC6.2□□□□□ -1.42
HMGB1P09429 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HMGB1P09429 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC6.2□□□□□ -1.42
HMGB1P09429 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HMGB1P09429 MIR4666A-201ENST00000580160 79 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
HMGB1P09429 BNIP3P27-201ENST00000599991 412 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC6.2□□□□□ -1.42
HMGB1P09429 AC005084.1-201ENST00000605160 304 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AL513477.2-201ENST00000607858 568 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AP000255.1-201ENST00000610276 676 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AC109454.4-201ENST00000623411 649 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AC067931.1-201ENST00000624190 671 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 AC087821.2-201ENST00000637086 450 ntBASIC6.2□□□□□ -1.42
HMGB1P09429 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC6.2□□□□□ -1.42
HMGB1P09429 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HMGB1P09429 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
HMGB1P09429 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
HMGB1P09429 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HMGB1P09429 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC6.19□□□□□ -1.42
HMGB1P09429 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
HMGB1P09429 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC6.19□□□□□ -1.42
HMGB1P09429 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HMGB1P09429 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
HMGB1P09429 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
HMGB1P09429 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
HMGB1P09429 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
HMGB1P09429 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
HMGB1P09429 RNA5SP90-201ENST00000364801 99 ntBASIC6.19□□□□□ -1.42
HMGB1P09429 AC007618.1-201ENST00000366455 732 ntBASIC6.19□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms