Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LSM1O15116 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
LSM1O15116 PSMA6P4-201ENST00000603247 718 ntBASIC4.29□□□□□ -1.72
LSM1O15116 Z98200.1-201ENST00000607298 470 ntBASIC4.29□□□□□ -1.72
LSM1O15116 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.29□□□□□ -1.72
LSM1O15116 SDR42E1P1-201ENST00000611327 477 ntBASIC4.29□□□□□ -1.72
LSM1O15116 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.29□□□□□ -1.72
LSM1O15116 CFTRP2-201ENST00000634304 199 ntBASIC4.29□□□□□ -1.72
LSM1O15116 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC4.29□□□□□ -1.72
LSM1O15116 AC015813.6-201ENST00000624409 5808 ntBASIC4.29□□□□□ -1.72
LSM1O15116 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
LSM1O15116 ADGRL2-201ENST00000319517 5479 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
LSM1O15116 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LSM1O15116 AC017007.4-201ENST00000503353 1352 ntBASIC4.28□□□□□ -1.72
LSM1O15116 ARHGAP28-207ENST00000532996 1859 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LSM1O15116 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
LSM1O15116 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
LSM1O15116 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
LSM1O15116 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
LSM1O15116 RNU6-386P-201ENST00000362650 107 ntBASIC4.28□□□□□ -1.72
LSM1O15116 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.28□□□□□ -1.72
LSM1O15116 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
LSM1O15116 RNU6-532P-201ENST00000384318 107 ntBASIC4.28□□□□□ -1.72
LSM1O15116 AC003975.1-201ENST00000411856 837 ntTSL 3 BASIC4.28□□□□□ -1.72
LSM1O15116 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.28□□□□□ -1.72
LSM1O15116 RPS12P10-201ENST00000427031 377 ntBASIC4.28□□□□□ -1.72
LSM1O15116 AC073335.1-201ENST00000427776 363 ntBASIC4.28□□□□□ -1.72
LSM1O15116 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.28□□□□□ -1.72
LSM1O15116 RPEP2-201ENST00000432149 701 ntBASIC4.28□□□□□ -1.72
LSM1O15116 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
LSM1O15116 AL049745.1-201ENST00000433953 286 ntBASIC4.28□□□□□ -1.72
LSM1O15116 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.28□□□□□ -1.72
LSM1O15116 RPL5P32-201ENST00000454085 879 ntBASIC4.28□□□□□ -1.72
LSM1O15116 RPS3AP41-201ENST00000462701 778 ntBASIC4.28□□□□□ -1.72
LSM1O15116 AC068305.1-201ENST00000497406 726 ntBASIC4.28□□□□□ -1.72
LSM1O15116 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.28□□□□□ -1.72
LSM1O15116 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.28□□□□□ -1.72
LSM1O15116 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.28□□□□□ -1.72
LSM1O15116 OR5M14P-201ENST00000506803 618 ntBASIC4.28□□□□□ -1.72
LSM1O15116 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC4.28□□□□□ -1.72
LSM1O15116 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.28□□□□□ -1.72
LSM1O15116 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC4.28□□□□□ -1.72
LSM1O15116 AL049874.4-201ENST00000557593 255 ntBASIC4.28□□□□□ -1.72
LSM1O15116 AGGF1P8-201ENST00000562979 1000 ntBASIC4.28□□□□□ -1.72
LSM1O15116 AC010649.1-203ENST00000592230 454 ntTSL 2 BASIC4.28□□□□□ -1.72
LSM1O15116 MIR6891-201ENST00000618788 93 ntBASIC4.28□□□□□ -1.72
LSM1O15116 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.28□□□□□ -1.72
LSM1O15116 OR2L1P-202ENST00000641567 1023 ntBASIC4.28□□□□□ -1.72
LSM1O15116 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LSM1O15116 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
LSM1O15116 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
LSM1O15116 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
LSM1O15116 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
LSM1O15116 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC4.28□□□□□ -1.73
LSM1O15116 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.27□□□□□ -1.73
LSM1O15116 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LSM1O15116 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
LSM1O15116 RNU6-618P-201ENST00000363518 112 ntBASIC4.27□□□□□ -1.73
LSM1O15116 LSM5-205ENST00000409952 687 ntTSL 4 BASIC4.27□□□□□ -1.73
LSM1O15116 LSM5-206ENST00000409987 504 ntTSL 5 BASIC4.27□□□□□ -1.73
LSM1O15116 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LSM1O15116 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.27□□□□□ -1.73
LSM1O15116 RPS26P13-201ENST00000419030 330 ntBASIC4.27□□□□□ -1.73
LSM1O15116 MTND2P11-201ENST00000423638 648 ntBASIC4.27□□□□□ -1.73
LSM1O15116 AC234779.1-201ENST00000425910 285 ntBASIC4.27□□□□□ -1.73
LSM1O15116 AP001324.1-201ENST00000428553 399 ntBASIC4.27□□□□□ -1.73
LSM1O15116 AC008072.1-201ENST00000434254 824 ntBASIC4.27□□□□□ -1.73
LSM1O15116 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.27□□□□□ -1.73
LSM1O15116 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC4.27□□□□□ -1.73
LSM1O15116 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.27□□□□□ -1.73
LSM1O15116 RPL36AP15-201ENST00000444514 266 ntBASIC4.27□□□□□ -1.73
LSM1O15116 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC4.27□□□□□ -1.73
LSM1O15116 RPS3AP53-201ENST00000454716 778 ntBASIC4.27□□□□□ -1.73
LSM1O15116 AC021205.1-201ENST00000468797 348 ntBASIC4.27□□□□□ -1.73
LSM1O15116 NIPA2P2-201ENST00000496376 1083 ntBASIC4.27□□□□□ -1.73
LSM1O15116 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
LSM1O15116 USP9YP5-201ENST00000511770 630 ntBASIC4.27□□□□□ -1.73
LSM1O15116 FTH1P9-201ENST00000513251 355 ntBASIC4.27□□□□□ -1.73
LSM1O15116 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.27□□□□□ -1.73
LSM1O15116 AC079209.1-201ENST00000519412 820 ntTSL 3 BASIC4.27□□□□□ -1.73
LSM1O15116 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC4.27□□□□□ -1.73
LSM1O15116 AC018616.1-201ENST00000524085 546 ntTSL 5 BASIC4.27□□□□□ -1.73
LSM1O15116 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
LSM1O15116 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC4.27□□□□□ -1.73
LSM1O15116 ZNF84-212ENST00000542874 540 ntTSL 5 BASIC4.27□□□□□ -1.73
LSM1O15116 PCNPP1-201ENST00000552501 511 ntBASIC4.27□□□□□ -1.73
LSM1O15116 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.27□□□□□ -1.73
LSM1O15116 AL109741.3-201ENST00000561748 592 ntBASIC4.27□□□□□ -1.73
LSM1O15116 AC009039.1-201ENST00000568711 471 ntTSL 4 BASIC4.27□□□□□ -1.73
LSM1O15116 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.27□□□□□ -1.73
LSM1O15116 AC005034.4-201ENST00000603612 899 ntBASIC4.27□□□□□ -1.73
LSM1O15116 IGKV1OR2-9-201ENST00000603957 287 ntBASIC4.27□□□□□ -1.73
LSM1O15116 IGKV1OR2-11-201ENST00000604120 287 ntBASIC4.27□□□□□ -1.73
LSM1O15116 AC010680.3-201ENST00000604215 520 ntBASIC4.27□□□□□ -1.73
LSM1O15116 HMGB1P51-201ENST00000605166 638 ntBASIC4.27□□□□□ -1.73
LSM1O15116 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.27□□□□□ -1.73
LSM1O15116 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.27□□□□□ -1.73
LSM1O15116 MIR7155-201ENST00000615925 56 ntBASIC4.27□□□□□ -1.73
LSM1O15116 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.27□□□□□ -1.73
LSM1O15116 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms