Protein–RNA interactions for Protein: Q9H4W6

EBF3, Transcription factor COE3, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3Q9H4W6 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 BX664727.1-201ENST00000416024 466 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC010099.3-201ENST00000423896 409 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 OR2B7P-201ENST00000429302 934 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AL589823.1-201ENST00000429577 183 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 NRBF2P3-201ENST00000432731 865 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 TXNP5-201ENST00000441043 315 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 CCRL1P1-201ENST00000449542 1053 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 RPL23AP23-201ENST00000452590 471 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 RAP1BP2-201ENST00000478270 544 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC093267.1-201ENST00000489176 961 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC010486.2-201ENST00000505572 483 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 HPRT1P1-201ENST00000509498 657 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 RNA5SP303-201ENST00000516192 130 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC010476.1-201ENST00000519111 851 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 C1GALT1P3-201ENST00000522049 819 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 SETP1-201ENST00000556014 845 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC124283.4-201ENST00000581815 456 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC011473.1-201ENST00000601280 443 ntTSL 2 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC011453.2-201ENST00000603737 729 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC011939.3-201ENST00000613686 466 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AL669942.2-201ENST00000620352 697 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 AC012414.7-202ENST00000622705 1090 ntBASIC5.08□□□□□ -1.6
EBF3Q9H4W6 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
EBF3Q9H4W6 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC010928.1-201ENST00000592477 1447 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 Z95331.1-201ENST00000623075 23112 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC126755.2-208ENST00000327792 462 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC138969.1-213ENST00000331436 462 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 RNU4-28P-201ENST00000364739 141 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 RNU6-298P-201ENST00000390888 96 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 RPL22P18-201ENST00000417197 377 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 COX6CP17-201ENST00000421389 185 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 MTCO3P5-201ENST00000433620 714 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC091390.1-201ENST00000433904 331 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AL627224.1-201ENST00000448334 444 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AL031313.1-201ENST00000448435 256 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 RNA5SP392-201ENST00000516905 112 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC004923.2-201ENST00000529649 369 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC025918.2-201ENST00000558683 763 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC068790.7-201ENST00000602347 528 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AL022067.1-201ENST00000602426 454 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC079880.2-201ENST00000603790 1213 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC104687.2-201ENST00000604442 342 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC012557.1-201ENST00000607115 611 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 BX005214.3-202ENST00000619809 325 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC068792.1-201ENST00000621354 417 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AC019080.5-201ENST00000624891 757 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 SATB1-AS1-269ENST00000630766 591 ntTSL 5 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 MIR3974-201ENST00000637126 96 ntBASIC5.07□□□□□ -1.6
EBF3Q9H4W6 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.07□□□□□ -1.6
EBF3Q9H4W6 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 159.5 ms