Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
VMP1Q96GC9 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VMP1Q96GC9 SERPINI2-206ENST00000471111 1331 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VMP1Q96GC9 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VMP1Q96GC9 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 SALL4P2-201ENST00000423288 2910 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 IL6STP1-201ENST00000346911 1020 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 RNU1-94P-201ENST00000362627 173 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VMP1Q96GC9 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
VMP1Q96GC9 MIR153-1-201ENST00000384914 90 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 RNU6-796P-201ENST00000391086 107 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 AL035419.1-201ENST00000397037 564 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 ATF1P1-201ENST00000406040 927 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 GJA6P-201ENST00000415117 1042 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 TMBIM7P-201ENST00000418074 855 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 OR5AW1P-201ENST00000426334 1006 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC093422.3-201ENST00000428506 305 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 COX6CP13-201ENST00000428703 226 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 VN1R54P-201ENST00000435210 1049 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC004980.3-201ENST00000447046 365 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 AL035407.2-201ENST00000454090 378 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 SNRPGP5-201ENST00000456003 220 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 SCARNA10-201ENST00000459255 330 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC093270.2-201ENST00000486157 792 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 NDUFA5P12-201ENST00000503796 343 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 RFESD-208ENST00000513950 464 ntTSL 5 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VMP1Q96GC9 RNA5SP249-201ENST00000516127 99 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 IGHV3-32-201ENST00000519182 355 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC090281.1-201ENST00000523019 276 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 SNHG1-219ENST00000542112 780 ntTSL 3 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 LLPHP1-201ENST00000603571 367 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC090510.2-201ENST00000617465 629 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC091905.4-201ENST00000623432 202 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC131971.1-201ENST00000332881 1482 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC095050.2-201ENST00000510748 1458 ntBASIC4.72□□□□□ -1.65
VMP1Q96GC9 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VMP1Q96GC9 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.72□□□□□ -1.65
VMP1Q96GC9 STK31-205ENST00000433467 3085 ntTSL 2 BASIC4.71□□□□□ -1.65
VMP1Q96GC9 XPOTP1-201ENST00000443317 2398 ntBASIC4.71□□□□□ -1.65
VMP1Q96GC9 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AL512646.1-201ENST00000269395 1077 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 MIR3074-201ENST00000384885 81 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AP000580.1-201ENST00000404439 358 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 AL035079.1-201ENST00000405210 287 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AL357078.2-201ENST00000416486 427 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC073508.1-201ENST00000428866 656 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 RNFT1P2-201ENST00000443064 757 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 OR7E125P-201ENST00000443450 846 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 MRPL35P4-201ENST00000453682 566 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 SNORD108-201ENST00000459332 71 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 GYG1P1-201ENST00000460864 698 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC108751.2-201ENST00000469993 231 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC020651.1-201ENST00000490324 360 ntTSL 3 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC010350.1-201ENST00000504908 231 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 NDUFB5P1-201ENST00000508134 564 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC021146.3-201ENST00000511911 260 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 RN7SKP96-201ENST00000516948 297 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 RN7SKP234-201ENST00000517173 224 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC136424.2-201ENST00000522582 563 ntTSL 4 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
VMP1Q96GC9 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AGGF1P9-201ENST00000561884 913 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 MIR4691-201ENST00000583764 85 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 ZNF92P2-201ENST00000600543 1059 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC105254.2-201ENST00000603636 436 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.71□□□□□ -1.66
VMP1Q96GC9 AL627230.1-201ENST00000613077 211 ntBASIC4.71□□□□□ -1.66
VMP1Q96GC9 AC108359.1-201ENST00000616451 1211 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 80.3 ms