Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC5.58□□□□□ -1.52
USP39Q53GS9 AC087883.1-201ENST00000551882 391 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC5.58□□□□□ -1.52
USP39Q53GS9 AC011260.1-201ENST00000578420 472 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.58□□□□□ -1.52
USP39Q53GS9 OR4G1P-201ENST00000588632 938 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AC012254.4-201ENST00000588843 273 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
USP39Q53GS9 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 AP002799.1-201ENST00000623552 423 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.58□□□□□ -1.52
USP39Q53GS9 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC5.58□□□□□ -1.52
USP39Q53GS9 OR10AB1P-202ENST00000641219 1686 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.58□□□□□ -1.52
USP39Q53GS9 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 GVINP1-202ENST00000531871 7271 ntBASIC5.58□□□□□ -1.52
USP39Q53GS9 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.58□□□□□ -1.52
USP39Q53GS9 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC5.58□□□□□ -1.52
USP39Q53GS9 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
USP39Q53GS9 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.58□□□□□ -1.52
USP39Q53GS9 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USP39Q53GS9 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC5.58□□□□□ -1.52
USP39Q53GS9 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 AL603750.1-201ENST00000624216 1717 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 BCORP1-203ENST00000513194 5093 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC011493.1-201ENST00000596753 1632 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 U3.28-201ENST00000391249 210 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 PGBD4P8-201ENST00000412993 562 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 Z75741.2-201ENST00000417272 1167 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 DIAPH3-AS1-201ENST00000422052 428 ntTSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC108075.1-201ENST00000424692 529 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 IPMKP1-201ENST00000425988 855 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC009263.1-201ENST00000441193 1239 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.57□□□□□ -1.52
USP39Q53GS9 RPS11P7-201ENST00000442125 465 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC5.57□□□□□ -1.52
USP39Q53GS9 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AP000542.1-201ENST00000448473 371 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC073850.1-201ENST00000449243 255 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 CYCSP42-201ENST00000450823 238 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 HTR2A-AS1-202ENST00000452352 384 ntTSL 2 BASIC5.57□□□□□ -1.52
USP39Q53GS9 SUMO2P2-201ENST00000456482 255 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 RPL35AP28-201ENST00000459730 331 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC107015.1-201ENST00000466902 747 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 CCDC75P1-201ENST00000469247 791 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC105918.1-201ENST00000474399 838 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 DSTNP2-201ENST00000504533 515 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 CTD-2350J17.1-201ENST00000509228 362 ntTSL 2 BASIC5.57□□□□□ -1.52
USP39Q53GS9 SEPT10P1-201ENST00000517342 1162 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC5.57□□□□□ -1.52
USP39Q53GS9 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 HIGD1AP5-201ENST00000529959 259 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC124293.1-201ENST00000530034 493 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.57□□□□□ -1.52
USP39Q53GS9 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.57□□□□□ -1.52
USP39Q53GS9 SRP54-AS1-203ENST00000556355 603 ntTSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC245505.1-201ENST00000556398 224 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC5.57□□□□□ -1.52
USP39Q53GS9 MIR4999-201ENST00000585029 91 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC098617.1-216ENST00000602099 708 ntTSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 HSPE1-MOB4-201ENST00000604458 890 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC090186.1-201ENST00000605991 572 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC133644.2-201ENST00000608142 540 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AC008083.4-201ENST00000615076 444 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC015712.7-201ENST00000615211 635 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 AC025574.2-201ENST00000615621 514 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 C3orf85-208ENST00000622536 925 ntAPPRIS P5 TSL 5 BASIC5.57□□□□□ -1.52
USP39Q53GS9 AP001784.1-201ENST00000624107 428 ntBASIC5.57□□□□□ -1.52
USP39Q53GS9 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 LINC00560-201ENST00000564593 1599 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USP39Q53GS9 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms