Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AL096803.3-201ENST00000609032 532 ntBASIC4.12□□□□□ -1.75
LIM2P55344 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.12□□□□□ -1.75
LIM2P55344 AL021997.2-201ENST00000615674 271 ntBASIC4.12□□□□□ -1.75
LIM2P55344 AP001005.3-201ENST00000622049 129 ntBASIC4.12□□□□□ -1.75
LIM2P55344 AC145207.9-201ENST00000623802 325 ntBASIC4.12□□□□□ -1.75
LIM2P55344 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.12□□□□□ -1.75
LIM2P55344 MIR7641-1-201ENST00000627518 61 ntBASIC4.12□□□□□ -1.75
LIM2P55344 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.12□□□□□ -1.75
LIM2P55344 AC091948.2-201ENST00000636510 279 ntBASIC4.12□□□□□ -1.75
LIM2P55344 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.12□□□□□ -1.75
LIM2P55344 AC119674.1-212ENST00000641155 993 ntBASIC4.12□□□□□ -1.75
LIM2P55344 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIM2P55344 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
LIM2P55344 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIM2P55344 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
LIM2P55344 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIM2P55344 CD86-203ENST00000393627 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
LIM2P55344 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC4.12□□□□□ -1.75
LIM2P55344 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIM2P55344 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIM2P55344 AC092079.1-201ENST00000558620 1985 ntBASIC4.11□□□□□ -1.75
LIM2P55344 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.11□□□□□ -1.75
LIM2P55344 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIM2P55344 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIM2P55344 RNA5SP28-201ENST00000363841 119 ntBASIC4.11□□□□□ -1.75
LIM2P55344 RNA5SP175-201ENST00000364275 119 ntBASIC4.11□□□□□ -1.75
LIM2P55344 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.11□□□□□ -1.75
LIM2P55344 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.11□□□□□ -1.75
LIM2P55344 FAR1P1-201ENST00000427163 934 ntBASIC4.11□□□□□ -1.75
LIM2P55344 AC073335.1-201ENST00000427776 363 ntBASIC4.11□□□□□ -1.75
LIM2P55344 DYNLL1P7-201ENST00000429273 258 ntBASIC4.11□□□□□ -1.75
LIM2P55344 RPS29P17-201ENST00000430795 166 ntBASIC4.11□□□□□ -1.75
LIM2P55344 AL132765.1-201ENST00000434165 553 ntBASIC4.11□□□□□ -1.75
LIM2P55344 MTND2P2-201ENST00000434633 945 ntBASIC4.11□□□□□ -1.75
LIM2P55344 AC092447.2-201ENST00000435487 669 ntBASIC4.11□□□□□ -1.75
LIM2P55344 CACYBPP1-201ENST00000438592 684 ntBASIC4.11□□□□□ -1.75
LIM2P55344 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.11□□□□□ -1.75
LIM2P55344 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC4.11□□□□□ -1.75
LIM2P55344 RPL7P32-201ENST00000457119 744 ntBASIC4.11□□□□□ -1.75
LIM2P55344 RPL7AP28-201ENST00000464513 571 ntBASIC4.11□□□□□ -1.75
LIM2P55344 AC011276.1-201ENST00000469688 323 ntBASIC4.11□□□□□ -1.75
LIM2P55344 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.11□□□□□ -1.75
LIM2P55344 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIM2P55344 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC4.11□□□□□ -1.75
LIM2P55344 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.11□□□□□ -1.75
LIM2P55344 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.11□□□□□ -1.75
LIM2P55344 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.11□□□□□ -1.75
LIM2P55344 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC4.11□□□□□ -1.75
LIM2P55344 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.11□□□□□ -1.75
LIM2P55344 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.11□□□□□ -1.75
LIM2P55344 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.11□□□□□ -1.75
LIM2P55344 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.11□□□□□ -1.75
LIM2P55344 MIR4277-201ENST00000578298 84 ntBASIC4.11□□□□□ -1.75
LIM2P55344 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.11□□□□□ -1.75
LIM2P55344 AC040174.2-201ENST00000602701 465 ntBASIC4.11□□□□□ -1.75
LIM2P55344 RPL26P30-202ENST00000602923 645 ntBASIC4.11□□□□□ -1.75
LIM2P55344 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.11□□□□□ -1.75
LIM2P55344 AC025175.1-201ENST00000606482 759 ntBASIC4.11□□□□□ -1.75
LIM2P55344 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.11□□□□□ -1.75
LIM2P55344 OR5R1-201ENST00000623286 975 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
LIM2P55344 AC140479.6-201ENST00000633535 357 ntBASIC4.11□□□□□ -1.75
LIM2P55344 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIM2P55344 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
LIM2P55344 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
LIM2P55344 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
LIM2P55344 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.1□□□□□ -1.75
LIM2P55344 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIM2P55344 AC019072.1-201ENST00000604535 1551 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIM2P55344 KCNRG-202ENST00000360473 1623 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
LIM2P55344 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.1□□□□□ -1.75
LIM2P55344 EIF2AP4-201ENST00000424793 1781 ntBASIC4.1□□□□□ -1.75
LIM2P55344 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
LIM2P55344 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
LIM2P55344 RNU1-15P-201ENST00000353977 144 ntBASIC4.1□□□□□ -1.75
LIM2P55344 RNU6-40P-201ENST00000384254 107 ntBASIC4.1□□□□□ -1.75
LIM2P55344 RNA5SP498-201ENST00000411342 120 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.1□□□□□ -1.75
LIM2P55344 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC4.1□□□□□ -1.75
LIM2P55344 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.1□□□□□ -1.75
LIM2P55344 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.1□□□□□ -1.75
LIM2P55344 RPL23AP52-201ENST00000439311 478 ntBASIC4.1□□□□□ -1.75
LIM2P55344 FHP1-201ENST00000442741 703 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.1□□□□□ -1.75
LIM2P55344 AC073587.1-201ENST00000447093 876 ntBASIC4.1□□□□□ -1.75
LIM2P55344 LINC01034-201ENST00000448806 277 ntTSL 3 BASIC4.1□□□□□ -1.75
LIM2P55344 RPL7P22-201ENST00000466005 733 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.1□□□□□ -1.75
LIM2P55344 AC007688.1-201ENST00000475592 759 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AC093663.2-201ENST00000484625 313 ntBASIC4.1□□□□□ -1.75
LIM2P55344 MTND2P31-201ENST00000512602 616 ntBASIC4.1□□□□□ -1.75
LIM2P55344 HMGB1P46-201ENST00000520062 610 ntBASIC4.1□□□□□ -1.75
LIM2P55344 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC4.1□□□□□ -1.75
LIM2P55344 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
LIM2P55344 AC009643.1-201ENST00000532030 391 ntBASIC4.1□□□□□ -1.75
LIM2P55344 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
LIM2P55344 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
LIM2P55344 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.1□□□□□ -1.75
LIM2P55344 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms