Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC073850.1-201ENST00000449243 255 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA3P55318 SEPT7P6-201ENST00000469999 1143 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AC096741.1-201ENST00000472250 846 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 F11-205ENST00000492972 1204 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA3P55318 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA3P55318 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXA3P55318 AC005798.1-201ENST00000513715 387 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 ATP5LP3-201ENST00000514223 304 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
FOXA3P55318 AC091515.1-201ENST00000548110 679 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC3.12□□□□□ -1.91
FOXA3P55318 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA3P55318 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA3P55318 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA3P55318 AC079171.1-201ENST00000568788 914 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.12□□□□□ -1.91
FOXA3P55318 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXA3P55318 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC3.12□□□□□ -1.91
FOXA3P55318 AL512782.1-201ENST00000603093 364 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AC083899.3-201ENST00000603413 594 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 AC004808.2-201ENST00000627965 773 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AC125613.1-204ENST00000636224 1248 ntTSL 5 BASIC3.12□□□□□ -1.91
FOXA3P55318 AL773545.4-201ENST00000637262 310 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 AL513478.4-201ENST00000641636 310 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 ENPP3-202ENST00000358229 3026 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.12□□□□□ -1.91
FOXA3P55318 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 LINC00561-201ENST00000565815 2738 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 INTS6P1-201ENST00000504674 2530 ntBASIC3.12□□□□□ -1.91
FOXA3P55318 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
FOXA3P55318 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.12□□□□□ -1.91
FOXA3P55318 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA3P55318 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA3P55318 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA3P55318 GALNT1-201ENST00000269195 3847 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA3P55318 RNA5SP305-201ENST00000362665 119 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA3P55318 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 AL603840.1-203ENST00000424357 645 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 AC115285.1-201ENST00000424879 736 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 LINC01445-201ENST00000426205 812 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 SCP2-206ENST00000430330 938 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA3P55318 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC3.11□□□□□ -1.91
FOXA3P55318 RAB9AP5-201ENST00000437794 597 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA3P55318 RAB9AP2-201ENST00000443911 597 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA3P55318 MTCO3P20-201ENST00000454926 688 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 AC005532.2-201ENST00000467154 373 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 AC010307.1-201ENST00000467206 836 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 AC092324.1-201ENST00000468671 324 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 HPRT1P2-201ENST00000505250 544 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 AC006499.3-201ENST00000506077 748 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 ZNF131-215ENST00000509931 970 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA3P55318 RPL7L1P4-201ENST00000513004 707 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 RNA5SP73-201ENST00000516744 108 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 TRAPPC2P2-201ENST00000517589 409 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 MFAP5-212ENST00000543369 972 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA3P55318 MTND2P13-201ENST00000577438 1039 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC3.11□□□□□ -1.91
FOXA3P55318 MIR4716-201ENST00000579628 84 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 AC098935.2-201ENST00000604222 466 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 AC090953.1-201ENST00000604305 1092 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA3P55318 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
FOXA3P55318 HSPA8P1-201ENST00000425843 1833 ntBASIC3.11□□□□□ -1.91
FOXA3P55318 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA3P55318 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.11□□□□□ -1.91
FOXA3P55318 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.11□□□□□ -1.91
FOXA3P55318 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.11□□□□□ -1.91
FOXA3P55318 AC010300.1-201ENST00000600671 5134 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 TNFAIP6-201ENST00000243347 1424 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA3P55318 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.1□□□□□ -1.91
FOXA3P55318 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA3P55318 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA3P55318 MAPK10-372ENST00000641954 3413 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.1□□□□□ -1.91
FOXA3P55318 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
FOXA3P55318 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
FOXA3P55318 MIR423-201ENST00000362201 94 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 RN7SKP15-201ENST00000364742 309 ntBASIC3.1□□□□□ -1.91
FOXA3P55318 AKAP14-204ENST00000371431 977 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
FOXA3P55318 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
FOXA3P55318 MIR765-201ENST00000390226 114 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms