Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC4.84□□□□□ -1.63
HMGCS2P54868 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HMGCS2P54868 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HMGCS2P54868 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC4.84□□□□□ -1.63
HMGCS2P54868 AGGF1P3-201ENST00000493675 1213 ntBASIC4.84□□□□□ -1.63
HMGCS2P54868 MORF4L2P1-201ENST00000503761 858 ntBASIC4.84□□□□□ -1.63
HMGCS2P54868 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.84□□□□□ -1.63
HMGCS2P54868 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC4.84□□□□□ -1.63
HMGCS2P54868 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HMGCS2P54868 RNA5SP360-201ENST00000516555 118 ntBASIC4.84□□□□□ -1.63
HMGCS2P54868 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC4.84□□□□□ -1.63
HMGCS2P54868 AC120057.2-201ENST00000571520 271 ntBASIC4.84□□□□□ -1.63
HMGCS2P54868 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC4.84□□□□□ -1.63
HMGCS2P54868 BNIP3P7-201ENST00000605641 516 ntBASIC4.84□□□□□ -1.63
HMGCS2P54868 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.84□□□□□ -1.63
HMGCS2P54868 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.84□□□□□ -1.63
HMGCS2P54868 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.84□□□□□ -1.63
HMGCS2P54868 AC090912.3-201ENST00000609775 533 ntBASIC4.84□□□□□ -1.63
HMGCS2P54868 SLC38A2-214ENST00000612232 1221 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HMGCS2P54868 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.84□□□□□ -1.63
HMGCS2P54868 AL158062.1-201ENST00000619632 745 ntBASIC4.84□□□□□ -1.63
HMGCS2P54868 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC4.84□□□□□ -1.63
HMGCS2P54868 AC016588.2-201ENST00000632484 3021 ntBASIC4.84□□□□□ -1.63
HMGCS2P54868 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.83□□□□□ -1.64
HMGCS2P54868 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.83□□□□□ -1.64
HMGCS2P54868 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HMGCS2P54868 MAPK10-303ENST00000641324 3959 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HMGCS2P54868 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HMGCS2P54868 AL133268.1-201ENST00000405676 1401 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HMGCS2P54868 EED-206ENST00000527888 1422 ntTSL 2 BASIC4.83□□□□□ -1.64
HMGCS2P54868 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HMGCS2P54868 AL672167.2-201ENST00000377164 879 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HMGCS2P54868 HSPE1P12-201ENST00000412576 301 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGCS2P54868 VN1R31P-201ENST00000417498 730 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 EIF4A1P1-201ENST00000420241 934 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGCS2P54868 AC018644.1-201ENST00000429934 551 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 GOT2P5-201ENST00000433995 546 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HMGCS2P54868 AL353743.2-203ENST00000443630 492 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGCS2P54868 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC4.83□□□□□ -1.64
HMGCS2P54868 MTCYBP14-201ENST00000457471 715 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 RPL38P1-201ENST00000460914 211 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 AC090013.1-201ENST00000485147 480 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 AC110792.1-201ENST00000491826 472 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC4.83□□□□□ -1.64
HMGCS2P54868 RNU6-362P-201ENST00000516736 90 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 HNRNPCP4-201ENST00000571636 900 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 AC107982.3-201ENST00000584957 985 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 AC024220.1-201ENST00000603675 484 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 AL391597.1-201ENST00000618707 694 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 MIR6075-201ENST00000620782 95 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.83□□□□□ -1.64
HMGCS2P54868 CR392039.5-201ENST00000623201 510 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HMGCS2P54868 AC000374.1-201ENST00000434698 1745 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 TTC39DP-201ENST00000416781 1688 ntBASIC4.83□□□□□ -1.64
HMGCS2P54868 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HMGCS2P54868 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.82□□□□□ -1.64
HMGCS2P54868 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.82□□□□□ -1.64
HMGCS2P54868 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.82□□□□□ -1.64
HMGCS2P54868 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.82□□□□□ -1.64
HMGCS2P54868 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.82□□□□□ -1.64
HMGCS2P54868 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
HMGCS2P54868 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
HMGCS2P54868 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.82□□□□□ -1.64
HMGCS2P54868 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
HMGCS2P54868 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 5S_rRNA.1-201ENST00000364415 116 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 S100A10-201ENST00000368809 616 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
HMGCS2P54868 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HMGCS2P54868 RNA5SP44-201ENST00000410446 133 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 SEPT7P8-201ENST00000413308 775 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.82□□□□□ -1.64
HMGCS2P54868 AC106901.1-201ENST00000425086 698 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 AL691449.1-201ENST00000426570 421 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 AC006011.1-201ENST00000442758 349 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 ATP5G1P3-201ENST00000463301 410 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 RPS4XP15-201ENST00000489210 795 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.82□□□□□ -1.64
HMGCS2P54868 TRAPPC2P2-201ENST00000517589 409 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.82□□□□□ -1.64
HMGCS2P54868 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC4.82□□□□□ -1.64
HMGCS2P54868 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
HMGCS2P54868 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGCS2P54868 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.82□□□□□ -1.64
HMGCS2P54868 AC067838.1-201ENST00000606064 577 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 SNORA35B-201ENST00000607417 129 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 AC006840.1-201ENST00000623069 542 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 AC138965.3-201ENST00000623875 498 ntBASIC4.82□□□□□ -1.64
HMGCS2P54868 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGCS2P54868 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGCS2P54868 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGCS2P54868 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGCS2P54868 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGCS2P54868 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms