Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
HOXA9P31269 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA9P31269 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.5□□□□□ -1.69
HOXA9P31269 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA9P31269 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA9P31269 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA9P31269 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA9P31269 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA9P31269 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA9P31269 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA9P31269 RNA5SP283-201ENST00000365604 119 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA9P31269 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.5□□□□□ -1.69
HOXA9P31269 MTCO1P51-201ENST00000427672 1060 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA9P31269 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA9P31269 Z95327.1-201ENST00000446082 482 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA9P31269 MTND6P32-201ENST00000457611 483 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 RNA5SP246-201ENST00000458909 119 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 RPL35AP15-201ENST00000468042 339 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 CCDC75P1-201ENST00000469247 791 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 RPL23AP37-201ENST00000479658 549 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 TPT1P3-201ENST00000492841 512 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 AC005699.1-201ENST00000510095 555 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA9P31269 SAP18P1-201ENST00000512058 390 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA9P31269 AL591770.1-201ENST00000554475 1131 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA9P31269 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC4.5□□□□□ -1.69
HOXA9P31269 RPL23AP97-201ENST00000568955 471 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.5□□□□□ -1.69
HOXA9P31269 OR7M1P-201ENST00000608946 533 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA9P31269 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA9P31269 AC007546.1-201ENST00000619452 559 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 AC007546.2-201ENST00000623996 360 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 AC008785.1-201ENST00000624475 456 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 AC138627.1-204ENST00000641894 765 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 AC027290.2-201ENST00000623210 18662 ntBASIC4.5□□□□□ -1.69
HOXA9P31269 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA9P31269 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.5□□□□□ -1.69
HOXA9P31269 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.5□□□□□ -1.69
HOXA9P31269 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.5□□□□□ -1.69
HOXA9P31269 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA9P31269 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA9P31269 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.5□□□□□ -1.69
HOXA9P31269 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA9P31269 DDX18P4-201ENST00000511690 1966 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.49□□□□□ -1.69
HOXA9P31269 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 RNA5SP151-201ENST00000365632 117 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 RNU6-167P-201ENST00000384292 106 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 MIR23B-201ENST00000384832 97 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXA9P31269 CDY14P-201ENST00000431260 1014 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 OR6C71P-201ENST00000432580 913 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 CDY12P-201ENST00000440679 1015 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXA9P31269 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXA9P31269 CDY13P-201ENST00000445813 1015 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA9P31269 EIF4A1P11-201ENST00000451239 222 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 CDY23P-201ENST00000451661 1014 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 RPL5P30-201ENST00000465511 891 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 RPS4XP18-201ENST00000495480 763 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 PPM1AP1-201ENST00000502740 1135 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 AC021146.3-201ENST00000511911 260 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 MTCO1P49-201ENST00000523429 802 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 AL352979.3-201ENST00000553515 247 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC4.49□□□□□ -1.69
HOXA9P31269 LINC01633-201ENST00000566476 1091 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 AP001542.1-201ENST00000591314 200 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 RPL7P50-201ENST00000600588 727 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 AC233280.2-201ENST00000603917 1070 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 AC015849.6-201ENST00000605454 474 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 CDRT1-208ENST00000630868 794 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 C12orf50-203ENST00000550553 1525 ntTSL 5 BASIC4.49□□□□□ -1.69
HOXA9P31269 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.49□□□□□ -1.69
HOXA9P31269 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.49□□□□□ -1.69
HOXA9P31269 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.49□□□□□ -1.69
HOXA9P31269 SLC17A3-204ENST00000397060 2052 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
HOXA9P31269 AC017104.4-201ENST00000636283 1592 ntBASIC4.48□□□□□ -1.69
HOXA9P31269 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA9P31269 IL6STP1-201ENST00000346911 1020 ntBASIC4.48□□□□□ -1.69
HOXA9P31269 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
HOXA9P31269 RNU1-20P-201ENST00000363314 162 ntBASIC4.48□□□□□ -1.69
HOXA9P31269 RNA5SP130-201ENST00000364431 114 ntBASIC4.48□□□□□ -1.69
HOXA9P31269 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC4.48□□□□□ -1.69
HOXA9P31269 OR13C3-201ENST00000374781 1108 ntBASIC4.48□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 94.8 ms