Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MIR6810-201ENST00000622701 70 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 FAM26D-205ENST00000628083 1117 ntTSL 2 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 FP325313.1-201ENST00000638228 703 ntBASIC3.3□□□□□ -1.88
HLA-DMBP28068 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HLA-DMBP28068 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC3.3□□□□□ -1.88
HLA-DMBP28068 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 MTFR1-203ENST00000458689 2500 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 BX005019.1-201ENST00000561881 1810 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 AC139713.2-214ENST00000642059 1811 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 AC008033.1-201ENST00000216407 1162 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 RPL32P3-201ENST00000359025 275 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 RNA5SP447-201ENST00000363749 119 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 RNA5SP105-201ENST00000391123 113 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 AC093719.1-202ENST00000392735 373 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 SMC4P1-201ENST00000414479 527 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 RPS26P47-201ENST00000427219 348 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 RPS6P12-201ENST00000432491 726 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 NDUFA5P1-201ENST00000433858 341 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 ABCF2P2-201ENST00000450549 296 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 Z95152.1-201ENST00000453556 656 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 AC093840.1-201ENST00000511599 336 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 HNRNPKP5-201ENST00000515300 253 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 IGLVVI-25-1-201ENST00000521893 249 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 PHBP17-201ENST00000528576 541 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 OR5BC1P-201ENST00000529327 739 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 AL352979.3-201ENST00000553515 247 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 MEG8-217ENST00000556637 924 ntTSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 AL354984.3-201ENST00000604803 325 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 AC100847.1-201ENST00000611316 481 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 AL356274.1-201ENST00000617064 410 ntBASIC3.29□□□□□ -1.88
HLA-DMBP28068 RFC1-217ENST00000639695 867 ntTSL 5 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 RMST-202ENST00000541282 2099 ntTSL 2 BASIC3.29□□□□□ -1.88
HLA-DMBP28068 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
HLA-DMBP28068 EED-206ENST00000527888 1422 ntTSL 2 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 DDX4-204ENST00000505374 2884 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 HSPD1P11-201ENST00000508643 1702 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 OR56B2P-202ENST00000641377 2453 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 AC093311.1-201ENST00000506586 2021 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 BAZ2B-204ENST00000392783 8289 ntAPPRIS P1 TSL 5 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 S100G-201ENST00000380200 455 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 SDHCP2-201ENST00000398565 501 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 AL583835.1-201ENST00000399570 407 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 AL136131.1-201ENST00000406079 803 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 P2RY10P2-201ENST00000416730 913 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 AL391219.1-201ENST00000422570 483 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 RPS27AP7-201ENST00000422792 455 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 RPEP3-201ENST00000425462 676 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 MTND2P2-201ENST00000434633 945 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 AL353597.2-202ENST00000434901 373 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 EEF1A1P1-201ENST00000447052 739 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 SYT14P1-201ENST00000481459 721 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC3.28□□□□□ -1.88
HLA-DMBP28068 SNORA26.10-201ENST00000516427 141 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 IGHV3-63-201ENST00000518422 341 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 IFITM8P-201ENST00000522529 394 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
HLA-DMBP28068 AC084783.1-201ENST00000565846 910 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 CYP4A43P-201ENST00000568156 121 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 EIF4A2P1-201ENST00000587313 1063 ntBASIC3.28□□□□□ -1.88
HLA-DMBP28068 AP001160.4-201ENST00000596971 382 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms