Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.47□□□□□ -1.69
APOEP02649 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC4.47□□□□□ -1.69
APOEP02649 AC025946.2-201ENST00000603398 234 ntBASIC4.47□□□□□ -1.69
APOEP02649 AC005034.4-201ENST00000603612 899 ntBASIC4.47□□□□□ -1.69
APOEP02649 ARF4P1-201ENST00000605447 541 ntBASIC4.47□□□□□ -1.69
APOEP02649 NRXN1-223ENST00000625891 1164 ntTSL 4 BASIC4.47□□□□□ -1.69
APOEP02649 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
APOEP02649 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
APOEP02649 CCT8P1-201ENST00000413611 1657 ntBASIC4.47□□□□□ -1.69
APOEP02649 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
APOEP02649 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.46□□□□□ -1.69
APOEP02649 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.46□□□□□ -1.7
APOEP02649 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
APOEP02649 HSPA8P17-201ENST00000427029 1382 ntBASIC4.46□□□□□ -1.7
APOEP02649 OR51F2-201ENST00000322110 993 ntAPPRIS ALT2 BASIC4.46□□□□□ -1.7
APOEP02649 RNA5SP52-201ENST00000362448 134 ntBASIC4.46□□□□□ -1.7
APOEP02649 RNA5SP366-201ENST00000365454 123 ntBASIC4.46□□□□□ -1.7
APOEP02649 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC4.46□□□□□ -1.7
APOEP02649 AL583835.1-201ENST00000399570 407 ntBASIC4.46□□□□□ -1.7
APOEP02649 AL049693.1-201ENST00000402760 611 ntBASIC4.46□□□□□ -1.7
APOEP02649 RPL6P29-201ENST00000414863 865 ntBASIC4.46□□□□□ -1.7
APOEP02649 MFSD13B-201ENST00000420133 1290 ntBASIC4.46□□□□□ -1.7
APOEP02649 PRELID3BP10-201ENST00000431957 584 ntBASIC4.46□□□□□ -1.7
APOEP02649 HLA-N-201ENST00000437516 135 ntBASIC4.46□□□□□ -1.7
APOEP02649 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC4.46□□□□□ -1.7
APOEP02649 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
APOEP02649 AC006499.6-201ENST00000511169 607 ntBASIC4.46□□□□□ -1.7
APOEP02649 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.46□□□□□ -1.7
APOEP02649 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC4.46□□□□□ -1.7
APOEP02649 VTA1P2-201ENST00000520205 911 ntBASIC4.46□□□□□ -1.7
APOEP02649 PHBP17-201ENST00000528576 541 ntBASIC4.46□□□□□ -1.7
APOEP02649 TRAV8-5-201ENST00000537369 341 ntBASIC4.46□□□□□ -1.7
APOEP02649 CYP4A43P-201ENST00000568156 121 ntBASIC4.46□□□□□ -1.7
APOEP02649 AC008638.3-201ENST00000603341 463 ntBASIC4.46□□□□□ -1.7
APOEP02649 AC007546.1-201ENST00000619452 559 ntBASIC4.46□□□□□ -1.7
APOEP02649 AC067852.7-201ENST00000623270 535 ntBASIC4.46□□□□□ -1.7
APOEP02649 OR10A6-202ENST00000623991 945 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
APOEP02649 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
APOEP02649 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
APOEP02649 AL133412.1-201ENST00000380194 2992 ntBASIC4.46□□□□□ -1.7
APOEP02649 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC4.46□□□□□ -1.7
APOEP02649 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
APOEP02649 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
APOEP02649 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
APOEP02649 PNPT1P2-201ENST00000456768 2050 ntBASIC4.45□□□□□ -1.7
APOEP02649 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.45□□□□□ -1.7
APOEP02649 AK9-202ENST00000355283 2499 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
APOEP02649 FAM3C2-201ENST00000312214 681 ntBASIC4.45□□□□□ -1.7
APOEP02649 MIR383-201ENST00000362257 73 ntBASIC4.45□□□□□ -1.7
APOEP02649 RNU1-132P-201ENST00000364300 164 ntBASIC4.45□□□□□ -1.7
APOEP02649 RNU6-1263P-201ENST00000384601 106 ntBASIC4.45□□□□□ -1.7
APOEP02649 RAB28P1-201ENST00000411517 641 ntBASIC4.45□□□□□ -1.7
APOEP02649 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.45□□□□□ -1.7
APOEP02649 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.45□□□□□ -1.7
APOEP02649 AL157831.1-201ENST00000426134 473 ntBASIC4.45□□□□□ -1.7
APOEP02649 ABCF2P2-201ENST00000450549 296 ntBASIC4.45□□□□□ -1.7
APOEP02649 RPL23AP81-201ENST00000455252 467 ntBASIC4.45□□□□□ -1.7
APOEP02649 LINC01014-203ENST00000455307 548 ntTSL 2 BASIC4.45□□□□□ -1.7
APOEP02649 AC146944.2-203ENST00000502493 354 ntBASIC4.45□□□□□ -1.7
APOEP02649 AC113404.3-201ENST00000506621 555 ntTSL 5 BASIC4.45□□□□□ -1.7
APOEP02649 AC108475.1-201ENST00000507880 950 ntBASIC4.45□□□□□ -1.7
APOEP02649 AC008958.1-201ENST00000511047 682 ntBASIC4.45□□□□□ -1.7
APOEP02649 AC139495.1-202ENST00000513164 354 ntBASIC4.45□□□□□ -1.7
APOEP02649 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
APOEP02649 RN7SKP122-201ENST00000515923 296 ntBASIC4.45□□□□□ -1.7
APOEP02649 RNA5SP154-201ENST00000516193 111 ntBASIC4.45□□□□□ -1.7
APOEP02649 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
APOEP02649 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.45□□□□□ -1.7
APOEP02649 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.45□□□□□ -1.7
APOEP02649 AC069240.1-201ENST00000548774 375 ntBASIC4.45□□□□□ -1.7
APOEP02649 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.45□□□□□ -1.7
APOEP02649 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
APOEP02649 MIR3939-201ENST00000582614 106 ntBASIC4.45□□□□□ -1.7
APOEP02649 AC011477.5-201ENST00000586571 259 ntBASIC4.45□□□□□ -1.7
APOEP02649 AL031666.3-201ENST00000609320 1006 ntBASIC4.45□□□□□ -1.7
APOEP02649 AC005962.2-201ENST00000611427 652 ntBASIC4.45□□□□□ -1.7
APOEP02649 FAM27D1-201ENST00000612308 341 ntBASIC4.45□□□□□ -1.7
APOEP02649 AL158062.1-201ENST00000619632 745 ntBASIC4.45□□□□□ -1.7
APOEP02649 MIR3653-201ENST00000625572 110 ntBASIC4.45□□□□□ -1.7
APOEP02649 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.45□□□□□ -1.7
APOEP02649 MIR6830-201ENST00000636015 70 ntBASIC4.45□□□□□ -1.7
APOEP02649 MIR6715B-201ENST00000637172 77 ntBASIC4.45□□□□□ -1.7
APOEP02649 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.45□□□□□ -1.7
APOEP02649 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.45□□□□□ -1.7
APOEP02649 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC4.45□□□□□ -1.7
APOEP02649 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.45□□□□□ -1.7
APOEP02649 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
APOEP02649 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC4.45□□□□□ -1.7
APOEP02649 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC4.44□□□□□ -1.7
APOEP02649 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC4.44□□□□□ -1.7
APOEP02649 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
APOEP02649 LINC00901-201ENST00000487512 1452 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
APOEP02649 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
APOEP02649 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
APOEP02649 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.44□□□□□ -1.7
APOEP02649 CENPF-201ENST00000366955 10307 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
APOEP02649 RNU1-14P-201ENST00000362759 152 ntBASIC4.44□□□□□ -1.7
APOEP02649 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.44□□□□□ -1.7
APOEP02649 RNA5SP36-201ENST00000410197 133 ntBASIC4.44□□□□□ -1.7
APOEP02649 RNA5SP104-201ENST00000410989 118 ntBASIC4.44□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms