Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC104446.1-201ENST00000613728 1321 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5□□□□□ -1.61
VPS28Q9UK41 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 MDM2-203ENST00000299252 966 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 MIR585-201ENST00000384887 94 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 HMGB3P19-201ENST00000403971 560 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC5□□□□□ -1.61
VPS28Q9UK41 AC007559.1-201ENST00000428736 355 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 AL049745.1-201ENST00000433953 286 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC5□□□□□ -1.61
VPS28Q9UK41 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC5□□□□□ -1.61
VPS28Q9UK41 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC5□□□□□ -1.61
VPS28Q9UK41 HSFY3P-201ENST00000444242 1191 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 Z80107.2-201ENST00000445127 392 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 OR1H1P-201ENST00000448731 937 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 AL356981.1-201ENST00000454879 684 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC5□□□□□ -1.61
VPS28Q9UK41 RPS17P11-201ENST00000474297 293 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC5□□□□□ -1.61
VPS28Q9UK41 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5□□□□□ -1.61
VPS28Q9UK41 HMGB1P1-201ENST00000522557 636 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5□□□□□ -1.61
VPS28Q9UK41 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC5□□□□□ -1.61
VPS28Q9UK41 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5□□□□□ -1.61
VPS28Q9UK41 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 OR4U1P-201ENST00000554958 912 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5□□□□□ -1.61
VPS28Q9UK41 AC104072.1-201ENST00000568817 668 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC5□□□□□ -1.61
VPS28Q9UK41 AC090312.1-201ENST00000580637 348 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 MIR4512-201ENST00000583257 77 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC5□□□□□ -1.61
VPS28Q9UK41 DNAJC19P3-201ENST00000594491 331 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 OR51F1-202ENST00000624103 939 ntAPPRIS ALT1 BASIC5□□□□□ -1.61
VPS28Q9UK41 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC5□□□□□ -1.61
VPS28Q9UK41 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5□□□□□ -1.61
VPS28Q9UK41 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
VPS28Q9UK41 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC5□□□□□ -1.61
VPS28Q9UK41 AC046144.1-201ENST00000478559 1853 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
VPS28Q9UK41 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5□□□□□ -1.61
VPS28Q9UK41 DHX9P1-201ENST00000436565 3076 ntBASIC5□□□□□ -1.61
VPS28Q9UK41 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5□□□□□ -1.61
VPS28Q9UK41 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
VPS28Q9UK41 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS28Q9UK41 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 RNA5SP191-201ENST00000362585 102 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 TMBIM7P-201ENST00000418074 855 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 MRPL50P1-201ENST00000431951 384 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 ELOCP11-201ENST00000436690 332 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 FABP5P3-201ENST00000437960 408 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 ELOCP16-201ENST00000444494 332 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 AC000111.2-201ENST00000448200 210 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 AC010733.1-201ENST00000451515 401 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 IFNWP4-201ENST00000453148 294 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 AURKAPS2-201ENST00000454983 333 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 CYCSP34-201ENST00000458172 304 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 GYG1P1-201ENST00000460864 698 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 AC112206.1-201ENST00000468416 477 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 LINC01995-201ENST00000489016 621 ntTSL 3 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 AC023050.1-201ENST00000498198 304 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 NAMPTP2-201ENST00000505629 1115 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 ENPP7P9-201ENST00000514456 627 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 LINC01609-202ENST00000522778 566 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 MIR4737-201ENST00000583979 81 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 RN7SL622P-201ENST00000585292 275 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS28Q9UK41 CR381572.2-201ENST00000624852 397 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 AC106858.1-201ENST00000637497 429 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 AC017104.5-201ENST00000637647 639 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 SDAD1P1-202ENST00000524156 2051 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 AC119744.1-201ENST00000454746 1715 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 AC008758.3-201ENST00000507003 1829 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS28Q9UK41 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS28Q9UK41 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 PSMD1-213ENST00000619128 3161 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
VPS28Q9UK41 ZNF849P-201ENST00000594711 1566 ntBASIC4.99□□□□□ -1.61
VPS28Q9UK41 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
VPS28Q9UK41 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
VPS28Q9UK41 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
VPS28Q9UK41 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms