Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.48□□□□□ -1.53
TDP1Q9NUW8 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 OR56B2P-201ENST00000317102 954 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 U3.10-201ENST00000364459 214 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 RNU6-317P-201ENST00000384031 107 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 TAF9BP1-201ENST00000396646 746 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 NUDT19P3-201ENST00000404698 555 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC093157.1-203ENST00000416329 713 ntTSL 5 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 MRPS36P1-201ENST00000421291 307 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 ISCA1P2-201ENST00000438679 421 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 ANKRD30BP3-201ENST00000444850 1070 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 TPTE2P6-202ENST00000445572 1007 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 MTCYBP3-201ENST00000445588 1137 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 DNAJB5P1-201ENST00000454004 806 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC079168.1-201ENST00000458741 345 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AL161747.1-201ENST00000480068 358 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 SCARNA20.4-201ENST00000516969 131 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 CDH12P4-201ENST00000517835 295 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 CDH12P3-201ENST00000517935 295 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 CDH12P1-201ENST00000518435 295 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC105185.1-201ENST00000518705 535 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC005832.3-201ENST00000537929 631 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 DPRXP4-201ENST00000578053 568 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC011840.5-201ENST00000582125 771 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC090312.2-201ENST00000582687 378 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 MIR4999-201ENST00000585029 91 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AL163642.2-201ENST00000604722 1019 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC093388.1-201ENST00000609166 430 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC023509.5-201ENST00000617434 807 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AP003400.3-201ENST00000624904 346 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC000095.2-202ENST00000637415 154 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AL355488.2-201ENST00000609909 2850 ntBASIC5.47□□□□□ -1.53
TDP1Q9NUW8 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.47□□□□□ -1.53
TDP1Q9NUW8 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.53
TDP1Q9NUW8 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
TDP1Q9NUW8 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
TDP1Q9NUW8 THAP12P4-201ENST00000528321 2266 ntBASIC5.46□□□□□ -1.53
TDP1Q9NUW8 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
TDP1Q9NUW8 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
TDP1Q9NUW8 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.46□□□□□ -1.53
TDP1Q9NUW8 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 AC140134.1-201ENST00000511830 3544 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 AC046144.1-201ENST00000478559 1853 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 SNURFL-201ENST00000309296 343 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 IL6STP1-201ENST00000346911 1020 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 LINC01967-201ENST00000356047 755 ntTSL 5 BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 U3.3-201ENST00000362986 216 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 RN7SKP103-201ENST00000363848 320 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 RNU6-553P-201ENST00000364047 96 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 CFHR1-202ENST00000367424 1070 ntTSL 5 BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 Y_RNA.436-201ENST00000384097 102 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 GSTA8P-201ENST00000404253 637 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 OR51A3P-201ENST00000413596 924 ntBASIC5.46□□□□□ -1.54
TDP1Q9NUW8 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.46□□□□□ -1.54
TDP1Q9NUW8 AC007285.2-201ENST00000433088 518 ntTSL 3 BASIC5.46□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms