Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC3.88□□□□□ -1.79
VPS13AQ96RL7 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 CDY3P-201ENST00000454543 1618 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 FCF1P7-201ENST00000451185 558 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC022081.1-201ENST00000537327 433 ntTSL 2 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC006960.3-201ENST00000561845 705 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 BNIP3P10-201ENST00000605360 577 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 MIR432-201ENST00000606207 94 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AL355365.1-201ENST00000616480 294 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AF001550.2-201ENST00000636643 217 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC244258.1-201ENST00000637553 1071 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC097461.1-201ENST00000568928 2821 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 SCN9A-202ENST00000409435 5967 ntAPPRIS ALT1 TSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 RNA5SP374-201ENST00000362939 125 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 DPY19L1P2-201ENST00000426647 915 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 NPM1P18-201ENST00000434232 732 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC092641.1-201ENST00000440229 772 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 RPL23AP12-201ENST00000467573 473 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 QTRT1P1-201ENST00000604344 1078 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 AC243654.2-201ENST00000612843 443 ntBASIC3.87□□□□□ -1.79
VPS13AQ96RL7 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 CEP152-201ENST00000325747 4986 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
VPS13AQ96RL7 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AL669831.5-218ENST00000591702 1873 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 TSC1-203ENST00000440111 8463 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 TMED11P-201ENST00000479478 690 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 RPL23AP37-201ENST00000479658 549 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AC004924.1-201ENST00000480160 781 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 MIR5680-201ENST00000577577 84 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AL592182.3-201ENST00000642132 3304 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 FMO2-201ENST00000209929 3851 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 DDX18P6-201ENST00000450119 1997 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 MIR1179-201ENST00000408703 91 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AC106873.1-201ENST00000420664 459 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 DNAJA1P1-201ENST00000425106 1187 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AC116003.1-202ENST00000579386 501 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AC015914.2-201ENST00000618167 288 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 ARHGAP42P3-201ENST00000443989 2508 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AL137141.1-201ENST00000624622 4836 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 MAP3K13-201ENST00000265026 9876 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 MAPK10-371ENST00000641952 5209 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AL161640.1-201ENST00000429507 390 ntTSL 2 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 OSBPL9P2-201ENST00000526582 1228 ntBASIC3.86□□□□□ -1.79
VPS13AQ96RL7 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC3.86□□□□□ -1.79
VPS13AQ96RL7 MAPK10-253ENST00000641010 4072 ntBASIC3.85□□□□□ -1.79
VPS13AQ96RL7 ZNF107-204ENST00000423627 5773 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 PTP4A1P3-201ENST00000433661 420 ntBASIC3.85□□□□□ -1.79
VPS13AQ96RL7 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 MIR449A-201ENST00000362113 91 ntBASIC3.85□□□□□ -1.79
VPS13AQ96RL7 RNA5SP399-201ENST00000364003 117 ntBASIC3.85□□□□□ -1.79
VPS13AQ96RL7 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 AC079630.1-201ENST00000412812 585 ntTSL 4 BASIC3.85□□□□□ -1.79
VPS13AQ96RL7 AC083863.1-201ENST00000438811 231 ntBASIC3.85□□□□□ -1.79
VPS13AQ96RL7 RPL21P13-201ENST00000488305 481 ntBASIC3.85□□□□□ -1.79
VPS13AQ96RL7 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms