Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNA5SP228-201ENST00000516232 133 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 OR5D15P-201ENST00000531671 942 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 AC093765.1-201ENST00000603758 881 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 AC090948.1-201ENST00000607464 549 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 AP003392.5-201ENST00000607857 415 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 AP000255.1-201ENST00000610276 676 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC42Q96M95 AC090246.1-201ENST00000616499 426 ntBASIC4.44□□□□□ -1.7
CCDC42Q96M95 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
CCDC42Q96M95 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.44□□□□□ -1.7
CCDC42Q96M95 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC42Q96M95 HSPA8P17-201ENST00000427029 1382 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC42Q96M95 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC42Q96M95 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 FAM3C2-201ENST00000312214 681 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 AC079741.1-201ENST00000321498 212 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC42Q96M95 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 AC087650.1-201ENST00000431445 468 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 MTND4LP12-201ENST00000448237 295 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 MTND2P25-201ENST00000449028 610 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 MTND2P28-201ENST00000457540 1044 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 AC105918.1-201ENST00000474399 838 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 AC069499.1-201ENST00000489433 509 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 KCTD9P2-201ENST00000512203 1013 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 RNA5SP49-201ENST00000516450 115 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC42Q96M95 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC42Q96M95 AC012417.1-201ENST00000582307 1039 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC4.43□□□□□ -1.7
CCDC42Q96M95 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC42Q96M95 AL031985.3-201ENST00000565390 2449 ntBASIC4.43□□□□□ -1.7
CCDC42Q96M95 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
CCDC42Q96M95 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC42Q96M95 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC42Q96M95 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC42Q96M95 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC42Q96M95 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC42Q96M95 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC42Q96M95 RPS3AP23-201ENST00000401762 784 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 FAR2P2-201ENST00000413041 594 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC42Q96M95 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 AC019050.1-201ENST00000418508 492 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 AL356535.1-201ENST00000440335 398 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 RPS20P4-201ENST00000461659 355 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 AF213884.1-201ENST00000488102 463 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 RPL35P6-201ENST00000490024 372 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 RN7SL691P-201ENST00000494487 301 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 AC093824.1-201ENST00000508796 343 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 AC109458.1-201ENST00000508858 316 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 RNU7-143P-201ENST00000516781 65 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 RN7SKP92-201ENST00000517266 244 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 AC010476.1-201ENST00000519111 851 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 OR8G5-201ENST00000524943 1041 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 GNRHR2P1-201ENST00000555315 631 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CCDC42Q96M95 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 AC010809.3-201ENST00000621310 641 ntBASIC4.42□□□□□ -1.7
CCDC42Q96M95 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
CCDC42Q96M95 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC42Q96M95 PNPT1P2-201ENST00000456768 2050 ntBASIC4.41□□□□□ -1.7
CCDC42Q96M95 RNU6-1263P-201ENST00000384601 106 ntBASIC4.41□□□□□ -1.7
CCDC42Q96M95 RPS16P5-201ENST00000406501 404 ntBASIC4.41□□□□□ -1.7
CCDC42Q96M95 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC42Q96M95 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC42Q96M95 AC069213.2-201ENST00000420238 366 ntBASIC4.41□□□□□ -1.7
CCDC42Q96M95 AL391219.1-201ENST00000422570 483 ntBASIC4.41□□□□□ -1.7
CCDC42Q96M95 RPS6P12-201ENST00000432491 726 ntBASIC4.41□□□□□ -1.7
CCDC42Q96M95 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC42Q96M95 AC096638.2-201ENST00000434965 711 ntBASIC4.41□□□□□ -1.7
CCDC42Q96M95 AC006466.1-201ENST00000438721 289 ntBASIC4.41□□□□□ -1.7
CCDC42Q96M95 TRIM31-AS1-204ENST00000440874 549 ntTSL 3 BASIC4.41□□□□□ -1.7
CCDC42Q96M95 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC42Q96M95 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC42Q96M95 LMOD2-201ENST00000456238 918 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC42Q96M95 APOOP2-201ENST00000461561 539 ntBASIC4.41□□□□□ -1.7
CCDC42Q96M95 RN7SL271P-201ENST00000487601 295 ntBASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms