Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.29□□□□□ -1.72
PDLIM3Q53GG5 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
PDLIM3Q53GG5 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC114947.2-201ENST00000565748 2125 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 SCARNA15-201ENST00000607520 4325 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 RNU1-85P-201ENST00000364127 164 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 RN7SKP227-201ENST00000364445 330 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 RNU6-1257P-201ENST00000384625 110 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 RPL31P52-201ENST00000407532 367 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 SNORA11F-201ENST00000408237 128 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 MIR1303-201ENST00000408625 86 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 CTSL3P-202ENST00000412179 788 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC104333.2-201ENST00000422630 192 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC114973.1-201ENST00000429057 632 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 LINC00595-203ENST00000432742 683 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 RPS7P2-201ENST00000435134 607 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 GTF3AP5-201ENST00000442645 697 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC044797.1-201ENST00000445744 679 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 snoU109.3-201ENST00000459477 145 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC018635.1-201ENST00000468292 1030 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 RN7SL354P-201ENST00000469282 294 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC010683.1-201ENST00000473673 378 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC093824.1-201ENST00000508796 343 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC126177.5-201ENST00000549599 178 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 MRPS21P7-201ENST00000566937 238 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 MIR4284-201ENST00000578924 81 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC233702.9-201ENST00000581528 203 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 UBA2-208ENST00000592791 910 ntTSL 2 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 ZNF92P3-201ENST00000596594 954 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC100781.1-203ENST00000598549 399 ntTSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 RPAP2P1-201ENST00000603626 1168 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC104687.2-201ENST00000604442 342 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC018695.5-201ENST00000605872 315 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC034229.4-201ENST00000607861 441 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AC100847.1-201ENST00000611316 481 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 BX005214.3-202ENST00000619809 325 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 OR4G3P-201ENST00000633500 913 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.28□□□□□ -1.72
PDLIM3Q53GG5 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 DDX18P4-201ENST00000511690 1966 ntBASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 AL627171.1-201ENST00000618845 1308 ntBASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 AC120338.1-201ENST00000625074 1541 ntBASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 IGKV7-3-201ENST00000357453 298 ntBASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 RNU6-984P-201ENST00000363236 109 ntBASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 RNA5SP479-201ENST00000364858 117 ntBASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 AC068538.1-201ENST00000376856 336 ntBASIC4.27□□□□□ -1.73
PDLIM3Q53GG5 RNU6-398P-201ENST00000384143 109 ntBASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 125.5 ms