Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NPM1P13-201ENST00000452663 865 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA1P49639 OR2AF1P-201ENST00000454899 889 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC079168.1-201ENST00000458741 345 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 RNU7-27P-201ENST00000459281 62 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 POMP-202ENST00000460403 1428 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC011476.1-201ENST00000466725 307 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 RN7SL189P-201ENST00000468631 289 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXA1P49639 RPL7P40-201ENST00000481703 745 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC104687.1-201ENST00000485829 412 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 RN7SL814P-201ENST00000487715 300 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 RPL15P21-201ENST00000495592 567 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 PGRMC2-203ENST00000503588 818 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXA1P49639 HMGB1P44-201ENST00000508597 572 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC006499.4-201ENST00000510947 694 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC005351.1-201ENST00000511152 786 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC108471.1-201ENST00000513977 287 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 CYCSP22-201ENST00000517555 339 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 TRIM77BP-201ENST00000524985 1119 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 MTCO3P15-201ENST00000526563 574 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC4.25□□□□□ -1.73
HOXA1P49639 DEFB130C-202ENST00000530001 230 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AP004607.2-201ENST00000533949 322 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 DUXAP6-201ENST00000553858 601 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC107958.2-201ENST00000555396 592 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC027104.1-201ENST00000563702 681 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC005412.1-201ENST00000580812 1049 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 RN7SL708P-201ENST00000580952 299 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA1P49639 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC010127.1-205ENST00000595268 567 ntTSL 5 BASIC4.25□□□□□ -1.73
HOXA1P49639 VN1R83P-201ENST00000595685 445 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 ZNF92P3-201ENST00000596594 954 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC068790.5-201ENST00000602741 355 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AL020997.3-201ENST00000602843 359 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC005252.1-201ENST00000604518 1063 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC009597.2-201ENST00000604659 592 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC009948.4-201ENST00000604692 675 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AL162591.3-201ENST00000607963 681 ntTSL 3 BASIC4.25□□□□□ -1.73
HOXA1P49639 AC007349.4-201ENST00000608114 532 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AL138478.1-201ENST00000612252 832 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC008115.3-201ENST00000614874 549 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 STMN1P1-201ENST00000617809 440 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC139769.3-201ENST00000618383 175 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 VN1R7P-201ENST00000619242 903 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 AC015908.5-201ENST00000623289 343 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 MIR193BHG-214ENST00000641765 509 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 ZNF663P-202ENST00000641770 1131 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA1P49639 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA1P49639 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
HOXA1P49639 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC4.25□□□□□ -1.73
HOXA1P49639 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA1P49639 KARSP3-201ENST00000571212 1504 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
HOXA1P49639 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC4.25□□□□□ -1.73
HOXA1P49639 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
HOXA1P49639 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.25□□□□□ -1.73
HOXA1P49639 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
HOXA1P49639 AC093311.1-201ENST00000506586 2021 ntBASIC4.24□□□□□ -1.73
HOXA1P49639 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA1P49639 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 RABGAP1L-203ENST00000347255 1744 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA1P49639 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.24□□□□□ -1.73
HOXA1P49639 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC4.24□□□□□ -1.73
HOXA1P49639 SNORD116.1-201ENST00000365628 92 ntBASIC4.24□□□□□ -1.73
HOXA1P49639 RNY3P9-201ENST00000384727 106 ntBASIC4.24□□□□□ -1.73
HOXA1P49639 MIR105-1-201ENST00000385222 81 ntBASIC4.24□□□□□ -1.73
HOXA1P49639 TRGV8-201ENST00000390343 468 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
HOXA1P49639 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 AP000357.1-201ENST00000409926 1165 ntBASIC4.24□□□□□ -1.73
HOXA1P49639 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC4.24□□□□□ -1.73
HOXA1P49639 AC004552.1-201ENST00000419089 348 ntBASIC4.24□□□□□ -1.73
HOXA1P49639 AC027644.1-201ENST00000419595 298 ntBASIC4.24□□□□□ -1.73
HOXA1P49639 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
HOXA1P49639 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC4.24□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 118.6 ms