Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 U3.18-201ENST00000390880 216 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 PRELID3BP11-201ENST00000414230 479 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 MTND4LP17-201ENST00000414607 293 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 AL139396.1-201ENST00000421137 167 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 CHEK2P5-201ENST00000423877 246 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 RPL12P12-201ENST00000424633 501 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC7.23□□□□□ -1.25
HLA-CQ95604 AC010881.1-201ENST00000433830 235 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC7.23□□□□□ -1.25
HLA-CQ95604 CBX1P4-201ENST00000439415 457 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 RPL5P7-201ENST00000444235 813 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 RN7SL174P-201ENST00000475578 289 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 RPL5P22-201ENST00000480199 884 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 AK3P4-201ENST00000504283 583 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 CSN1S1-203ENST00000507763 597 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 SUMO2P7-201ENST00000511179 285 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 LIAS-206ENST00000513731 826 ntTSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC7.23□□□□□ -1.25
HLA-CQ95604 RN7SKP219-201ENST00000516825 296 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 NARSP2-201ENST00000518524 679 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 ST13P6-201ENST00000522430 1102 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 AP001804.3-201ENST00000525146 880 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 MT1B-202ENST00000562399 351 ntTSL 3 BASIC7.23□□□□□ -1.25
HLA-CQ95604 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC7.23□□□□□ -1.25
HLA-CQ95604 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 MIR3146-201ENST00000580367 79 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC7.23□□□□□ -1.25
HLA-CQ95604 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 AL157817.1-201ENST00000614264 790 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 NPPA-AS1_1.1-201ENST00000622391 173 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 AC061999.1-201ENST00000624454 177 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 ATM-230ENST00000640388 578 ntTSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC7.23□□□□□ -1.25
HLA-CQ95604 DDX24-211ENST00000640432 2580 ntTSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 ALG13-224ENST00000610588 4175 ntTSL 2 BASIC7.23□□□□□ -1.25
HLA-CQ95604 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 PDE8B-208ENST00000505283 3474 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 NFIB-221ENST00000637742 2166 ntTSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 KCNH7-202ENST00000332142 4113 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 HNRNPA1P54-201ENST00000411857 9714 ntBASIC7.23□□□□□ -1.25
HLA-CQ95604 CIITA-201ENST00000324288 11952 ntAPPRIS P3 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
HLA-CQ95604 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.23□□□□□ -1.25
HLA-CQ95604 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 CA5B-201ENST00000318636 6835 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 SLC6A16-202ENST00000454748 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 KLRD1-201ENST00000336164 3258 ntAPPRIS P4 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
HLA-CQ95604 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
HLA-CQ95604 AC067968.1-201ENST00000591793 3766 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
HLA-CQ95604 SLA-201ENST00000338087 3451 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 WDR75-201ENST00000314761 2701 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 DHRS9-204ENST00000428522 1678 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
HLA-CQ95604 VPS35P1-201ENST00000563400 1518 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 PAH-201ENST00000307000 2466 ntTSL 5 BASIC7.22□□□□□ -1.25
HLA-CQ95604 MYO6-207ENST00000615563 4026 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 EIF4E2-202ENST00000409098 3448 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 CLEC9A-201ENST00000355819 1734 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 ZHX3-211ENST00000544979 3933 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 AC107983.2-201ENST00000425211 4735 ntTSL 2 BASIC7.22□□□□□ -1.25
HLA-CQ95604 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 LINC00294-201ENST00000631190 3306 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
HLA-CQ95604 C4BPA-201ENST00000367070 2243 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HLA-CQ95604 RN7SKP174-201ENST00000363803 330 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 Y_RNA.212-201ENST00000364177 102 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 RNY4P16-201ENST00000364768 94 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 Y_RNA.367-201ENST00000365544 101 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 AL606923.1-201ENST00000406616 190 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 HMGN1P20-201ENST00000411849 300 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC7.22□□□□□ -1.25
HLA-CQ95604 GAPDHP57-201ENST00000424400 585 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 AC003989.1-201ENST00000434569 565 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC7.22□□□□□ -1.25
HLA-CQ95604 AC104308.1-201ENST00000454621 333 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC7.22□□□□□ -1.25
HLA-CQ95604 AC093870.1-201ENST00000506837 213 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC7.22□□□□□ -1.25
HLA-CQ95604 SNORA25.10-201ENST00000515926 124 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 RNU6-202P-201ENST00000515998 96 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 AC009812.2-201ENST00000517657 457 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 AP001831.1-201ENST00000524610 411 ntTSL 3 BASIC7.22□□□□□ -1.25
HLA-CQ95604 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC7.22□□□□□ -1.25
HLA-CQ95604 AC012100.2-201ENST00000558317 304 ntTSL 5 BASIC7.22□□□□□ -1.25
HLA-CQ95604 AC069061.3-201ENST00000582254 823 ntBASIC7.22□□□□□ -1.25
HLA-CQ95604 SNORD39.3-201ENST00000584451 71 ntBASIC7.22□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms