Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 RNA5SP397-201ENST00000391323 118 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 SEC63P1-201ENST00000425785 1258 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AL138785.1-201ENST00000425821 331 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AL732292.1-201ENST00000426692 226 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 RPS24P8-201ENST00000431490 402 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 TRAPPC13P1-201ENST00000435991 1062 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 CDC27P1-201ENST00000445384 715 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 H2AFZP5-201ENST00000446960 382 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 MTND3P4-201ENST00000453537 303 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 TPT1P1-201ENST00000458495 518 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 RPL7AP28-201ENST00000464513 571 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AC106806.2-201ENST00000509365 500 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 RPL23AP53-201ENST00000521854 457 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AC005868.1-201ENST00000536421 331 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AC007224.1-201ENST00000564410 144 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 VN1R84P-201ENST00000593697 235 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AC100847.1-201ENST00000611316 481 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 MIR7973-1-201ENST00000614683 76 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 CFTRP2-201ENST00000634304 199 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 METTL8-218ENST00000638989 876 ntTSL 5 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 OR56B2P-202ENST00000641377 2453 ntBASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
HDDC3Q8N4P3 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 IFI16-201ENST00000295809 2867 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AL136164.3-201ENST00000624429 3978 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 RNU6-317P-201ENST00000384031 107 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 UQCRBP1-201ENST00000421129 336 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 GAPDHP49-201ENST00000421421 961 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 RPL35AP21-201ENST00000437667 333 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 LINC01754-201ENST00000437920 750 ntTSL 3 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 GTF3AP5-201ENST00000442645 697 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 HMGB1P5-202ENST00000451497 985 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AL358176.1-201ENST00000457477 357 ntTSL 5 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC011276.1-201ENST00000469688 323 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 OR9N1P-202ENST00000494289 481 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC090819.1-201ENST00000523800 1111 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 HNRNPCP4-201ENST00000571636 900 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 MIR3939-201ENST00000582614 106 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC073137.1-201ENST00000605636 634 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC010857.1-201ENST00000606398 594 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC242628.1-201ENST00000606810 391 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AL392048.1-201ENST00000613946 534 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 AC011944.2-201ENST00000624440 683 ntBASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC4.73□□□□□ -1.65
HDDC3Q8N4P3 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 78.7 ms