Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AP002530.1-201ENST00000405705 684 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 HMGB3P18-201ENST00000406327 590 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 SNORA11.2-201ENST00000408318 127 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 RPS27AP7-201ENST00000422792 455 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AL935212.3-201ENST00000450729 284 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 SNORA84-201ENST00000459229 133 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 snoU13.22-201ENST00000459428 104 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC104164.3-201ENST00000467363 1258 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC108729.1-201ENST00000487812 947 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 IGBP1P4-201ENST00000503202 879 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 MYL12BP2-201ENST00000503948 512 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 UBE2V1P12-201ENST00000503954 474 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC021193.1-201ENST00000511607 420 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 GCSHP4-201ENST00000538792 439 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC114546.1-201ENST00000560140 473 ntTSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 ATP5F1P7-201ENST00000567330 760 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 MIR4429-201ENST00000580105 73 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 MIR4715-201ENST00000584117 79 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC068790.7-201ENST00000602347 528 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AL121652.1-201ENST00000608851 448 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AL355816.2-201ENST00000610049 647 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 AC011447.7-201ENST00000624228 1590 ntBASIC4.89□□□□□ -1.63
COL28A1Q2UY09 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.89□□□□□ -1.63
COL28A1Q2UY09 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC139713.2-214ENST00000642059 1811 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC106754.1-201ENST00000562632 1513 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 ENSAP3-201ENST00000312710 333 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 RNU1-64P-201ENST00000365443 163 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 U6.112-201ENST00000384129 70 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AL591848.1-201ENST00000413092 322 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 LIPT1P1-201ENST00000415870 1186 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 RPS24P8-201ENST00000431490 402 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 NPM1P33-201ENST00000438918 872 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 LINC01309-201ENST00000444795 492 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 CASP3P1-201ENST00000446037 609 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 NPM1P39-201ENST00000449818 867 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AURKAPS2-201ENST00000454983 333 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 RPS4XP6-201ENST00000477670 797 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC058823.1-201ENST00000485315 474 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AP001372.4-201ENST00000524889 472 ntBASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.88□□□□□ -1.63
COL28A1Q2UY09 POLR2KP1-201ENST00000553226 168 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms